Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_O23
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    27   3.5  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    26   4.6  
SPCC1235.04c |||FAD synthetase|Schizosaccharomyces pombe|chr 3||...    26   4.6  
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    26   6.0  
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ...    25   8.0  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    25   8.0  

>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = -3

Query: 644 RVNWTVRDMR*GRIQSDVGP---VRYPSTMTLAFVPVIQS 534
           RV W   +   G++ +D  P   V+YPS +  A VPV++S
Sbjct: 427 RVRWAACNAV-GQMSTDFAPDMQVKYPSRILEALVPVLES 465


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = +3

Query: 495 VAANVF-SDTVYMNGLYNGNKGESHRARIPNWANIRLNSTLSHIPYSPVYSLDTKEGAFK 671
           V A VF  D V +   YN ++  S  +RI +  N  LNS+   +  S V  L       K
Sbjct: 399 VQALVFCGDMVNIQRWYNMSRVNSELSRIKHLLNCFLNSSTVSLDVSMVLELLRDLKKKK 458

Query: 672 VRVDXERSIV 701
           ++VD    ++
Sbjct: 459 IKVDERTLVI 468


>SPCC1235.04c |||FAD synthetase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 265

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 328 VSKPIMAATCLFRVKNRHIHAILIEAQQI 242
           +S P+  A C F  +++HI AILI  +++
Sbjct: 118 ISLPMKEAFCKFLKEHKHIQAILIGIRRL 146


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
            Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -1

Query: 319  PIMAATCLFRVKNRHIHAILIEAQQILKF*IFIIYR 212
            P++A   + RV  + I   ++EA ++L++  F +YR
Sbjct: 973  PVIARQVMQRVVKKFIAGQVVEATELLEYLSFSLYR 1008


>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 862

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/50 (24%), Positives = 24/50 (48%)
 Frame = -3

Query: 605 IQSDVGPVRYPSTMTLAFVPVIQSVHVDRIAEYVRCYVTIAYRRHESIVG 456
           +  D  P   P T T   + ++Q+  +  +A+Y +    +AY+   S +G
Sbjct: 128 VDLDWSPQGIPWTETSTGICILQATVLSSLAQYAQANDEVAYQYVRSAIG 177


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +3

Query: 528 MNGLYNGNKGESHRARIPNWANIRLNSTLSHIPYS 632
           M+ L+  NKG +H+   PN++      + S + +S
Sbjct: 1   MSFLFKRNKGSAHKPTKPNFSKTSTTPSTSQLKHS 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,663,297
Number of Sequences: 5004
Number of extensions: 51546
Number of successful extensions: 122
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)