Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_O23
         (706 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY373340-1|AAQ76550.1| 1007|Caenorhabditis elegans BAM-2 protein.      33   0.15 
AC024853-1|AAO21419.1| 1007|Caenorhabditis elegans Branching abn...    33   0.15 
U39472-10|AAZ82853.1|  354|Caenorhabditis elegans Serpentine rec...    29   4.3  
Z83237-4|CAB05788.1|  356|Caenorhabditis elegans Hypothetical pr...    28   7.5  

>AY373340-1|AAQ76550.1| 1007|Caenorhabditis elegans BAM-2 protein.
          Length = 1007

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +3

Query: 459 NDRFMASIGNGHVAANVFSDTVYMNGLYNGNKGESHRARIPNWANIRLNSTLS 617
           ND F+ + GN  VA    SD  +   +   N+ +SH  +I ++  I L  ++S
Sbjct: 236 NDFFIRADGNAPVAVTHLSDATWHTAIVKHNQPDSHFLKIDDFPEIELGKSIS 288


>AC024853-1|AAO21419.1| 1007|Caenorhabditis elegans Branching
           abnormal protein 2 protein.
          Length = 1007

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +3

Query: 459 NDRFMASIGNGHVAANVFSDTVYMNGLYNGNKGESHRARIPNWANIRLNSTLS 617
           ND F+ + GN  VA    SD  +   +   N+ +SH  +I ++  I L  ++S
Sbjct: 236 NDFFIRADGNAPVAVTHLSDATWHTAIVKHNQPDSHFLKIDDFPEIELGKSIS 288


>U39472-10|AAZ82853.1|  354|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 36 protein.
          Length = 354

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +2

Query: 605 FDLIAYPVQSSLLFRYKRRRL*SQS 679
           FDLI +P+   ++ RY+R+ L SQ+
Sbjct: 202 FDLICFPINFLIMIRYRRKFLKSQN 226


>Z83237-4|CAB05788.1|  356|Caenorhabditis elegans Hypothetical
           protein R06B9.4 protein.
          Length = 356

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 533 VHVDRIAEYVRCYVTIAYRRHESIVGWQPECG 438
           +HVD +AEY  C   +  R +       P+CG
Sbjct: 156 IHVDNVAEYCHCLPCLPTRGNVIYTLQSPKCG 187


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,720,574
Number of Sequences: 27780
Number of extensions: 287565
Number of successful extensions: 591
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)