Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_O20
(496 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.06 |brx1||ribosome biogenesis protein Brx1|Schizosacchar... 28 0.89
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos... 27 1.6
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol... 25 4.7
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 4.7
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23... 25 4.7
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 25 4.7
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 25 6.3
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch... 25 8.3
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s... 25 8.3
SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce... 25 8.3
>SPBC800.06 |brx1||ribosome biogenesis protein
Brx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 27.9 bits (59), Expect = 0.89
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Frame = +1
Query: 82 IVECGHTFVGTSVNRPLVYHHDVQY-SSKMFRKRVENLHFSLPHVPSIFGRSIQG---IL 249
+ C + F S R +Y H + + + VENLH ++ + ++ G +++G IL
Sbjct: 92 LYNCNNIFFFESRRREDLYLHIARAPNGPTVKFHVENLH-TMDEL-NMTGNALKGSRPIL 149
Query: 250 AFDKTYSTA 276
+FDKT+ TA
Sbjct: 150 SFDKTFDTA 158
>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 721
Score = 27.1 bits (57), Expect = 1.6
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +1
Query: 106 VGTSVNRPLVYHHDVQYSSKMFRKRVENLH-FSLPHVPSIFGRSIQGILAFDKTYSTASA 282
V ++N VY H+ SSK F+K ++ LH F + R G+ ++ ++ T A
Sbjct: 336 VNAAMNTVCVYFHEGP-SSKAFQKHIQRLHDFMWVQPEGMLMRGTNGLQVWETSF-TLQA 393
Query: 283 NITQG 297
+ G
Sbjct: 394 LVESG 398
>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 797
Score = 25.4 bits (53), Expect = 4.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 257 TRPIAPLLRTSPKAESALTSS 319
+RP+ PLL+ P+ ALT S
Sbjct: 639 SRPVQPLLKQRPQLHRALTES 659
>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 604
Score = 25.4 bits (53), Expect = 4.7
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 142 HDVQYSSKMFRKRVENLHFSLP 207
+D+ ++S +FRKR + +FS P
Sbjct: 309 YDLFFASPVFRKRTSSFYFSQP 330
>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
S23|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 25.4 bits (53), Expect = 4.7
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = -2
Query: 351 F*SALALHAKIDEVKADSALGDVRRSGAIGLVEGQNALNGPPEDGRHMRQAEMEVF 184
F SA LH KI + ++RS G +G+ L+G P GR + + E+F
Sbjct: 165 FTSASLLHRKI----TTELVNVLQRSKDQGTKDGRFLLDGAPGSGRSIALIQAELF 216
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 25.4 bits (53), Expect = 4.7
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 164 KCSVRELKTSISACLMCLPSSGGPFRAFWPST 259
+CS+ EL+T +++ L PS F F PS+
Sbjct: 177 ECSLSELQTIVTSLLAEHPSLAHEFHNFLPSS 208
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 25.0 bits (52), Expect = 6.3
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 232 SIQGILAFDKTYSTASANITQGGIGFNFVNLR 327
SI+GI +D A + T GGIG N N+R
Sbjct: 227 SIEGI--YDTLKMCAMISKTAGGIGINIHNIR 256
>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
oxidase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 24.6 bits (51), Expect = 8.3
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 181 VENLHFSLPHVPSIFGRSIQGILA 252
++NL +SLP V SI S+ GI++
Sbjct: 107 LQNLGYSLPIVGSISETSVSGIMS 130
>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 24.6 bits (51), Expect = 8.3
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 168 HFRAVLHVMVVDQGPIDAGADESVTAFHDHRS 73
H ++LH V+D + G+ S AF + RS
Sbjct: 130 HIASLLHDDVIDHANVRRGSPSSNVAFGNRRS 161
>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 24.6 bits (51), Expect = 8.3
Identities = 8/31 (25%), Positives = 21/31 (67%)
Frame = +1
Query: 142 HDVQYSSKMFRKRVENLHFSLPHVPSIFGRS 234
H +++ K+ K+ + + +++ H+P ++GRS
Sbjct: 161 HFLKHYHKVRAKKYDEVLYAVYHLPLVYGRS 191
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,741,290
Number of Sequences: 5004
Number of extensions: 33842
Number of successful extensions: 102
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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