Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_O20
(496 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1580 - 34576595-34576723,34576905-34576981,34577058-345771... 36 0.014
05_03_0664 - 16762121-16762637,16762704-16763331,16763418-16763637 30 0.89
06_03_1227 + 28557855-28558323,28558426-28558586,28558850-285589... 29 1.6
02_01_0490 + 3541056-3542276 29 2.7
02_01_0018 + 119890-120238,120331-120424,120518-121529 28 3.6
07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477... 28 4.7
02_05_0388 + 28541751-28541820,28541912-28542054,28542199-285422... 27 6.3
10_08_0689 + 19912040-19912186,19912483-19912548 27 8.3
08_02_1334 - 26224546-26225337 27 8.3
08_02_0828 - 21596570-21597337 27 8.3
07_03_1783 + 29480987-29481165,29481526-29481685,29481767-294818... 27 8.3
05_04_0355 - 20577189-20577275,20578001-20578129,20578252-205783... 27 8.3
>04_04_1580 -
34576595-34576723,34576905-34576981,34577058-34577104,
34577864-34577964,34578114-34578203,34578647-34578763,
34578835-34578992,34579562-34579843,34580367-34580667
Length = 433
Score = 36.3 bits (80), Expect = 0.014
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +1
Query: 97 HTFVGTSVNRPLVYHH-DVQYSSKMFRKRVENLHFSLPHVPSIF 225
+T V TS PL +HH +Q S + F+ RV + + + PH+PS F
Sbjct: 78 YTMVPTSAMLPLQHHHRQLQISQENFQDRVPSNNVAAPHLPSNF 121
>05_03_0664 - 16762121-16762637,16762704-16763331,16763418-16763637
Length = 454
Score = 30.3 bits (65), Expect = 0.89
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -2
Query: 219 GRHMRQAEMEVFNSLTEHFRAVLHVMVVDQGPIDAGADESVTAF 88
GRH A++ VFN+ + L +++ GP DAG + S T +
Sbjct: 257 GRHWEGADVIVFNTYL-WWCTGLQFRILEDGPFDAGGNSSTTTW 299
>06_03_1227 +
28557855-28558323,28558426-28558586,28558850-28558929,
28559015-28559150,28559239-28559388,28559717-28559899
Length = 392
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = -2
Query: 408 HICLLLKQ*LSKNVYIVMNF*SALALHAKIDEVKADSALG-DVRRSGAIGLVEGQNALN 235
++C LL + +++Y+V +F ++ A + + K A+G VRR+ A+G G L+
Sbjct: 126 NVCALLGCCVDRDLYLVFHFSGRGSVSANLHDEKKAPAMGWAVRRAIAVGTARGLEYLH 184
>02_01_0490 + 3541056-3542276
Length = 406
Score = 28.7 bits (61), Expect = 2.7
Identities = 23/72 (31%), Positives = 34/72 (47%)
Frame = +2
Query: 98 TLSSAPASIGPWSTTMTCSTARKCSVRELKTSISACLMCLPSSGGPFRAFWPSTRPIAPL 277
T SA S P +T T +T + S S+ L+ L +GG S +APL
Sbjct: 142 TKPSASTSASP--STATAATPSRSSNSSAARSLK--LLLLQRNGGRASGAAASDLSVAPL 197
Query: 278 LRTSPKAESALT 313
LR S +E++L+
Sbjct: 198 LRDSSDSEASLS 209
>02_01_0018 + 119890-120238,120331-120424,120518-121529
Length = 484
Score = 28.3 bits (60), Expect = 3.6
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = -2
Query: 297 ALGDVR--RSGAIGLVEGQNALNGPPEDGRHMRQA 199
ALGD+ S +I L+E Q+ L PP + R MR+A
Sbjct: 255 ALGDIAFAYSYSIILIEIQDTLRSPPAEARTMRKA 289
>07_03_1291 + 25545749-25546262,25546989-25547669,25547693-25547751,
25549152-25549242,25549330-25549743,25550191-25550243,
25550947-25551177,25551492-25551708,25551790-25551890,
25552446-25552532,25553536-25553676,25553839-25553961,
25554070-25554522,25554931-25555308,25555410-25556060,
25556264-25556368,25556482-25556707,25557204-25557241
Length = 1520
Score = 27.9 bits (59), Expect = 4.7
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2
Query: 131 WSTTMTCSTARKCSVRELKTSISACLMC 214
W++ +C TA KC + K S+ C C
Sbjct: 1306 WTSFYSCLTAVKCGKKSFKESLVRCESC 1333
>02_05_0388 +
28541751-28541820,28541912-28542054,28542199-28542248,
28543087-28543210,28543765-28543770
Length = 130
Score = 27.5 bits (58), Expect = 6.3
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +2
Query: 104 SSAPASIGPWSTTM--TCSTARKCSVRELKTSISACLMCLPSSG 229
SS ASIGP T KC EL + S+ L+CLPS G
Sbjct: 3 SSTAASIGPPQPPPPPTSPEEEKCLNLELWHACSSPLVCLPSVG 46
>10_08_0689 + 19912040-19912186,19912483-19912548
Length = 70
Score = 27.1 bits (57), Expect = 8.3
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +2
Query: 179 ELKTSISACLMCLPSSGGPFRAFWPSTRPIAPLLRTSPKAESALTS 316
EL TS+SA M L ++ +RA S+RP+ P + + E +T+
Sbjct: 4 ELDTSLSASGMTLLTAWVSYRANLASSRPLTPGIFSDRLLERPMTN 49
>08_02_1334 - 26224546-26225337
Length = 263
Score = 27.1 bits (57), Expect = 8.3
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 92 AVTLSSAPASIGPWSTTMTCSTARKCSVREL 184
+VTL+ A++GP T + A C++R+L
Sbjct: 9 SVTLADQLAAVGPAGTAAATAAAGSCNLRDL 39
>08_02_0828 - 21596570-21597337
Length = 255
Score = 27.1 bits (57), Expect = 8.3
Identities = 17/55 (30%), Positives = 20/55 (36%)
Frame = -1
Query: 244 CPEWTSRRWKAHEAS*NGGFQLSYGTFSSCTARHGGRPRAY*RWCRRKCDRIPRS 80
C RW AH+ GG S T S + GR + RW K P S
Sbjct: 89 CRADACERWDAHKNKKAGGSAASSSTSSRASGGSPGRADSCERWDAHKTPGSPAS 143
>07_03_1783 +
29480987-29481165,29481526-29481685,29481767-29481862,
29481948-29482062,29482175-29482337,29482536-29482707,
29483924-29484013,29484137-29484598,29484675-29485268,
29485486-29485554,29485810-29485902,29486432-29486677,
29487277-29487417,29487748-29487828,29487911-29487973,
29488059-29488166,29488303-29488383,29488474-29488521,
29488979-29489053,29489973-29490068,29490156-29490236,
29490295-29490402,29490989-29491033,29491119-29491202,
29491379-29491482,29491581-29491728
Length = 1233
Score = 27.1 bits (57), Expect = 8.3
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 182 LKTSISACLMCLPSSGGPFRA 244
LK++ +ACL C SS P+RA
Sbjct: 278 LKSAFAACLKCTHSSAEPWRA 298
>05_04_0355 -
20577189-20577275,20578001-20578129,20578252-20578371,
20578505-20578741,20578983-20579258,20579375-20579508,
20580006-20581632
Length = 869
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 94 GHTFVGTSVNRPLVYHHDVQYSSKMFRKRVENLHFSLPHVP 216
G VG S NR + +H + S + K+++NL L H+P
Sbjct: 829 GRLIVGLS-NREIKKNHGICSSIPFYFKKIDNLIVILDHLP 868
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,084,932
Number of Sequences: 37544
Number of extensions: 260113
Number of successful extensions: 734
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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