Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_O20
         (496 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   1.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   5.4  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   9.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.5  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = +1

Query: 166 MFRKRVENLHFSLPHVPSIFGRSIQGILAFDKTYSTASANITQGGIGFNFVNLRMKSERG 345
           M RK++  L  ++   P+    + +  +    T++     ITQ G G  F+ ++   ERG
Sbjct: 461 MNRKQISELESNMQISPNELKPNDKSQVIKQNTWTVFRDAITQTGTGPAFLTIKEWIERG 520

Query: 346 S 348
           +
Sbjct: 521 T 521


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 36   MYEVANRCVATRRC 77
            MYE  N C   RRC
Sbjct: 1688 MYEELNHCAPNRRC 1701


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 248 WPSTRPIAPLL 280
           +PS RP APLL
Sbjct: 877 FPSVRPFAPLL 887


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 153 VQLENVP*ES*KPPFQLASCAFHLREVHSGHSGLRQ 260
           + LEN P ++ + P Q  S  +  R+V    +  RQ
Sbjct: 132 MNLENFPMDTQRCPLQFGSFGYTKRDVIYKWNSARQ 167


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 222 LREVHSGHSGLR 257
           LRE+H  ++GLR
Sbjct: 287 LREIHLAYNGLR 298


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,585
Number of Sequences: 438
Number of extensions: 2312
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13667319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)