Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_O19
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0665 - 31003333-31003680,31003773-31003854,31004068-310041... 143 2e-34
05_06_0123 + 25817172-25817470,25818983-25819133,25819217-258193... 142 2e-34
05_06_0187 - 26212133-26212477,26212564-26212645,26213066-262131... 134 5e-32
01_06_0546 + 30124693-30124970,30125711-30125861,30125955-301261... 131 5e-31
07_01_0702 + 5288588-5288889,5289257-5289407,5289543-5289725,529... 124 8e-29
07_03_0211 + 15239636-15241132 123 1e-28
01_01_0638 - 4819365-4819685,4819702-4819882,4820018-4820073,482... 116 2e-26
05_01_0589 - 5281105-5281434,5281532-5281613,5281833-5281963,528... 116 2e-26
05_04_0096 - 17931061-17931435,17931539-17931620,17932319-179324... 116 3e-26
01_07_0132 - 41298184-41298558,41298648-41298729,41298850-412989... 104 7e-23
01_01_0384 - 2970369-2970726,2970812-2970882,2971428-2971509,297... 30 1.7
05_01_0453 - 3592555-3592897,3592997-3593067,3593372-3593465,359... 29 3.0
01_01_0770 - 5968042-5968281,5968799-5969156,5970975-5971384 29 3.0
07_03_1468 - 26739872-26740912 29 3.9
12_01_0428 + 3374519-3375423,3376663-3376742,3377206-3377217,337... 29 5.2
08_02_0644 - 19658270-19658626,19659142-19659218,19659256-196594... 29 5.2
08_02_1360 + 26391141-26391287,26392256-26392627,26393372-26393860 28 6.9
10_08_0036 + 14325793-14326457,14326610-14328035 28 9.1
04_04_1192 + 31611804-31612113,31612235-31614058,31614098-316148... 28 9.1
>01_06_0665 -
31003333-31003680,31003773-31003854,31004068-31004198,
31004272-31004370,31004511-31004666,31004877-31004951,
31005554-31005736,31005833-31005983,31006732-31007027
Length = 506
Score = 143 bits (346), Expect = 2e-34
Identities = 83/174 (47%), Positives = 112/174 (64%), Gaps = 8/174 (4%)
Frame = +1
Query: 217 DLKKGLSRADHDKATVKCWITYIQDLPNGKERGKFLALDLGGTNFRVLIINLGENHFDMQ 396
++++GL RAD A +K I+Y+ +LP G E G F ALDLGGTNFRV+ + LG +
Sbjct: 73 EMERGL-RAD-PHAPLKMLISYVDNLPTGDEHGLFYALDLGGTNFRVIRVQLGGREKRVV 130
Query: 397 SKIY---AIPKHIMTGTGIALFDHIAECLANFMKEHG----VYEERLA-LGFTFSFPLKQ 552
S+ Y AIP H+M GT + LFD IA L +F+K G + E R LGFTFSFP+ Q
Sbjct: 131 SQQYEEVAIPPHLMVGTSMELFDFIAAELESFVKTEGEDFHLPEGRQRELGFTFSFPVHQ 190
Query: 553 LGLTKGVLQRWTKGFSCSGVVGEDVVQGLKDAIARRGDVQIDICAILNDTTGTL 714
++ G L +WTKGFS +G VGEDVV L A+ R+G + + + A++NDT GTL
Sbjct: 191 TSISSGTLIKWTKGFSINGTVGEDVVAELSRAMERQG-LDMKVTALVNDTVGTL 243
>05_06_0123 +
25817172-25817470,25818983-25819133,25819217-25819399,
25819740-25819814,25819985-25820140,25820275-25820373,
25820457-25820587,25821077-25821158,25821251-25821598
Length = 507
Score = 142 bits (345), Expect = 2e-34
Identities = 81/174 (46%), Positives = 108/174 (62%), Gaps = 8/174 (4%)
Frame = +1
Query: 217 DLKKGLSRADHDKATVKCWITYIQDLPNGKERGKFLALDLGGTNFRVLIINLGENHFDMQ 396
++++GL H A VK ITY+ +LP G E+G F ALDLGGTNFRVL + LG +
Sbjct: 74 EMERGLRGDSH--AMVKMLITYVDNLPTGNEQGLFYALDLGGTNFRVLRVQLGGKEKRVV 131
Query: 397 SKIY---AIPKHIMTGTGIALFDHIAECLANFMKEHG----VYEERLA-LGFTFSFPLKQ 552
+ Y +IP H+M GT + LFD IA L+ F+ G + E R LGFTFSFP+ Q
Sbjct: 132 QQQYEEVSIPPHLMVGTSMELFDFIASALSKFVDTEGDDFHLPEGRQRELGFTFSFPVSQ 191
Query: 553 LGLTKGVLQRWTKGFSCSGVVGEDVVQGLKDAIARRGDVQIDICAILNDTTGTL 714
++ G L +WTKGFS + VGEDVV L A+ R+G + + I A++NDT GTL
Sbjct: 192 TSISSGTLIKWTKGFSINDAVGEDVVSELGKAMERQG-LDMKIAALVNDTVGTL 244
>05_06_0187 -
26212133-26212477,26212564-26212645,26213066-26213196,
26213267-26213365,26213627-26213782,26213891-26213965,
26214156-26214338,26214431-26214581,26215456-26215718
Length = 494
Score = 134 bits (325), Expect = 5e-32
Identities = 83/201 (41%), Positives = 112/201 (55%), Gaps = 8/201 (3%)
Frame = +1
Query: 136 LQRIREECEVLKMTDKQIKEIMCRLHNDLKKGLSRADHDKATVKCWITYIQDLPNGKERG 315
L+ + E C +Q+ + M ++ GL+ K +K I+Y+ LP+G+E+G
Sbjct: 38 LRELEERCAAPPGRLRQVADAMAV---EMHAGLASEGGSK--LKMIISYVDALPSGEEKG 92
Query: 316 KFLALDLGGTNFRVLIINLGENH---FDMQSKIYAIPKHIMTGTGIALFDHIAECLANFM 486
F ALDLGGTNFRVL + LG + +IP H+MTG LFD IA LA F+
Sbjct: 93 VFYALDLGGTNFRVLRVQLGGKEGRVIKQEHDEISIPPHLMTGGSNELFDFIASSLAKFV 152
Query: 487 KEHG----VYEERLA-LGFTFSFPLKQLGLTKGVLQRWTKGFSCSGVVGEDVVQGLKDAI 651
G + E R LGFTFSFP+KQ + G L WTKGFS VGEDVV L A+
Sbjct: 153 ASEGEDFHLAEGRQRELGFTFSFPVKQTSIASGTLINWTKGFSIDETVGEDVVTELTKAL 212
Query: 652 ARRGDVQIDICAILNDTTGTL 714
R+G + + + A++NDT GTL
Sbjct: 213 ERQG-LDMKVTALINDTIGTL 232
>01_06_0546 +
30124693-30124970,30125711-30125861,30125955-30126137,
30126333-30126407,30126535-30126690,30126909-30127007,
30127075-30127205,30127690-30127771,30127846-30128199
Length = 502
Score = 131 bits (317), Expect = 5e-31
Identities = 78/210 (37%), Positives = 118/210 (56%), Gaps = 8/210 (3%)
Frame = +1
Query: 136 LQRIREECEVLKMTDKQIKEIMCRLHNDLKKGLSRADHDKATVKCWITYIQDLPNGKERG 315
L+ ++E C +Q+ + M +++ GL A + ++ +TY+ LP+G E+G
Sbjct: 43 LRDLQERCAAPVELLRQVADAMAA---EMRAGL--AAEGGSDLQMLVTYVDSLPSGGEKG 97
Query: 316 KFLALDLGGTNFRVLIINLGENH---FDMQSKIYAIPKHIMTGTGIALFDHIAECLANFM 486
F ALDLGGTNFRVL + LG S+ +IP+H+M+ + LFD +A LA F+
Sbjct: 98 MFYALDLGGTNFRVLRVQLGGKERRIIKQDSEGISIPQHLMSSSSHELFDFVAVALAKFV 157
Query: 487 KEHGV-----YEERLALGFTFSFPLKQLGLTKGVLQRWTKGFSCSGVVGEDVVQGLKDAI 651
G + LGFTFSFP+KQ L G L +WTK F+ +VG+DVV L AI
Sbjct: 158 ASEGEDCHLPEGTQRELGFTFSFPVKQKSLASGTLIKWTKSFAIDEMVGKDVVAELNMAI 217
Query: 652 ARRGDVQIDICAILNDTTGTLMSCAWKNHN 741
+G + + + A++NDT GTL + + NH+
Sbjct: 218 RSQG-LDMKVTALVNDTVGTLAAGRYVNHD 246
>07_01_0702 +
5288588-5288889,5289257-5289407,5289543-5289725,
5290063-5290137,5290248-5290403,5290502-5290597,
5290855-5290985,5291057-5291138,5291237-5291586,
5293029-5293234,5293254-5293570
Length = 682
Score = 124 bits (299), Expect = 8e-29
Identities = 73/184 (39%), Positives = 106/184 (57%), Gaps = 8/184 (4%)
Frame = +1
Query: 187 IKEIMCRLHNDLKKGLSRADHDKATVKCWITYIQDLPNGKERGKFLALDLGGTNFRVLII 366
++ + + + ++ GL AD +K +++ LP G E G F ALDLGGTNFRVL +
Sbjct: 65 LRRVADAMASGMRAGL--ADDGAGELKMIPSHVYSLPTGNETGLFYALDLGGTNFRVLRV 122
Query: 367 NLG---ENHFDMQSKIYAIPKHIMTGTGIALFDHIAECLANFM-----KEHGVYEERLAL 522
LG + D + + +IP+ IM G LFD IA L+ F+ K H + L
Sbjct: 123 QLGGKDKRIIDTEFEQVSIPREIMHGITEDLFDFIASGLSRFVATEGDKFHLPQGRKREL 182
Query: 523 GFTFSFPLKQLGLTKGVLQRWTKGFSCSGVVGEDVVQGLKDAIARRGDVQIDICAILNDT 702
GFTFSFP+ Q + G+L +WTKGF+ SG G+DVV L A+ R+G + + + A++NDT
Sbjct: 183 GFTFSFPVNQTSIDSGILIKWTKGFAVSGTAGKDVVACLNAAMERQG-LDMRVSALVNDT 241
Query: 703 TGTL 714
GTL
Sbjct: 242 VGTL 245
>07_03_0211 + 15239636-15241132
Length = 498
Score = 123 bits (297), Expect = 1e-28
Identities = 75/209 (35%), Positives = 113/209 (54%), Gaps = 8/209 (3%)
Frame = +1
Query: 112 KMGIVVDNLQRIREECEVLKMTDKQIKEIMCRLHNDLKKGLSRADHDKATVKCWITYIQD 291
KM + +RE C ++ E+ + +++ GL+ + + +K ++Y+
Sbjct: 37 KMAAAQRVVAELREACAT---PAARLAEVAAAMAGEMEAGLA-VEGGSSEMKMIVSYVDS 92
Query: 292 LPNGKERGKFLALDLGGTNFRVLIINL-GENHFDMQSKIYAIPKHIMTGTGIA---LFDH 459
LP G E G + ALDLGGTNFRVL + L G + ++ IP +M+G G LF
Sbjct: 93 LPTGGEEGSYYALDLGGTNFRVLRVRLAGGGVAERVAREVPIPPGLMSGGGATSECLFGF 152
Query: 460 IAECLANFM----KEHGVYEERLALGFTFSFPLKQLGLTKGVLQRWTKGFSCSGVVGEDV 627
IA LA F+ +E G+ LGFTFSFP+ Q + G L RWTK F+ +GEDV
Sbjct: 153 IASALAEFVGEEEEEGGLDGGERELGFTFSFPVHQTSIASGTLIRWTKAFAVDDAIGEDV 212
Query: 628 VQGLKDAIARRGDVQIDICAILNDTTGTL 714
V L+ A++ RG + + + A++NDT GTL
Sbjct: 213 VAALQAAMSERG-LDMRVSALINDTVGTL 240
>01_01_0638 -
4819365-4819685,4819702-4819882,4820018-4820073,
4820107-4820148,4820484-4820639,4820681-4820809,
4821072-4821254,4821374-4821524,4821670-4821848
Length = 465
Score = 116 bits (280), Expect = 2e-26
Identities = 66/178 (37%), Positives = 106/178 (59%), Gaps = 8/178 (4%)
Frame = +1
Query: 187 IKEIMCRLHNDLKKGLSRADHDKATVKCWITYIQDLPNGKERGKFLALDLGGTNFRVLII 366
++++ + ++ GL + + VK ++Y+ LP G+E G F LDLGGTNFRVL +
Sbjct: 24 LRDVAAAMAGEMGAGLEKEGGSR--VKMLLSYVDKLPTGREDGLFYGLDLGGTNFRVLKV 81
Query: 367 NLG--ENHF-DMQSKIYAIPKHIMTGTGIALFDHIAECLANFM--KEHGV---YEERLAL 522
+LG + H + +S+ +IP H+M+GT LF IA L F+ +E G ++ L
Sbjct: 82 HLGGSKKHVVNSESREVSIPPHLMSGTSSELFGFIAGELGKFVAEEEEGTDMPNGKKKEL 141
Query: 523 GFTFSFPLKQLGLTKGVLQRWTKGFSCSGVVGEDVVQGLKDAIARRGDVQIDICAILN 696
GFTFSFP++Q + G L +WTK FS VGEDVV L+ A+ ++G + + + A+++
Sbjct: 142 GFTFSFPVRQRSVASGTLVKWTKAFSIDDAVGEDVVAELQTAMVKQG-LDMHVAALVS 198
>05_01_0589 -
5281105-5281434,5281532-5281613,5281833-5281963,
5282029-5282169,5282274-5282429,5282522-5282596,
5282777-5282956,5283097-5283247,5283526-5283612,
5284239-5284349,5284447-5284634
Length = 543
Score = 116 bits (279), Expect = 2e-26
Identities = 64/155 (41%), Positives = 93/155 (60%), Gaps = 7/155 (4%)
Frame = +1
Query: 307 ERGKFLALDLGGTNFRVLIINLGENH---FDMQSKIYAIPKHIMTGTGIALFDHIAECLA 477
E G F ALDLGGTNFRVL + L +S+ +IP H+M+G LF IA LA
Sbjct: 131 EEGLFYALDLGGTNFRVLRVQLAGKEKRVVKRESREVSIPPHLMSGNSSELFGFIASALA 190
Query: 478 NFMKEHG---VYEERLA-LGFTFSFPLKQLGLTKGVLQRWTKGFSCSGVVGEDVVQGLKD 645
F+ + G V+ +R LGFTFSFP++Q + G L +WTK FS VGEDVV L+
Sbjct: 191 KFVADEGHNAVFNDRQRELGFTFSFPVRQTSIASGTLIKWTKAFSIDDAVGEDVVAELQM 250
Query: 646 AIARRGDVQIDICAILNDTTGTLMSCAWKNHNCXI 750
A+ ++G + + + A++NDT GTL + ++ + + +
Sbjct: 251 AMEKQG-LDMRVSALINDTVGTLAAGSYYDEDIVV 284
>05_04_0096 -
17931061-17931435,17931539-17931620,17932319-17932446,
17932523-17932621,17932739-17932894,17934120-17934194,
17934582-17934749,17934825-17934993,17936640-17936923
Length = 511
Score = 116 bits (278), Expect = 3e-26
Identities = 66/160 (41%), Positives = 94/160 (58%), Gaps = 9/160 (5%)
Frame = +1
Query: 262 VKCWITYIQDLPNGK-------ERGKFLALDLGGTNFRVLIINLGENHFDMQSKI--YAI 414
V+ +T + LP+G E G A+DLGGT+FRVL + LG + K+ I
Sbjct: 82 VRMLLTCVDALPDGSSHDMTRSEEGISYAIDLGGTSFRVLKVELGAGSTIINRKVEHQPI 141
Query: 415 PKHIMTGTGIALFDHIAECLANFMKEHGVYEERLALGFTFSFPLKQLGLTKGVLQRWTKG 594
P+++ GT LF+ IA L NF++ G E ALGFTFSFP++Q ++ G L RWTK
Sbjct: 142 PENLTKGTSDDLFNFIASALKNFIEREGGEVEGRALGFTFSFPVRQTSISSGTLIRWTKE 201
Query: 595 FSCSGVVGEDVVQGLKDAIARRGDVQIDICAILNDTTGTL 714
FS VG+DV Q L +A+AR G + + + ++N+T GTL
Sbjct: 202 FSIEEAVGKDVAQCLNEALARNG-LNMKVNVLVNNTVGTL 240
>01_07_0132 -
41298184-41298558,41298648-41298729,41298850-41298977,
41299059-41299157,41299279-41299434,41300709-41300783,
41301962-41302137,41303210-41303252,41303336-41303503,
41303584-41303731,41306316-41306587
Length = 573
Score = 104 bits (250), Expect = 7e-23
Identities = 54/154 (35%), Positives = 91/154 (59%), Gaps = 2/154 (1%)
Frame = +1
Query: 145 IREECEVLKMTDKQIKEIMCRLHNDLKKGLSRADHDKATVKCWITYIQDLPNGKERGKFL 324
+RE E ++++++ + ++ GL+ K +K +T++ LP+G E G +
Sbjct: 41 LREFEEGCATPPARLRQVVDAMVVEMHAGLASDGGSK--LKMLLTFVDALPSGSEEGVYY 98
Query: 325 ALDLGGTNFRVLIINLGENHFDMQSKI--YAIPKHIMTGTGIALFDHIAECLANFMKEHG 498
++DLGGTNFRVL + +G + K+ IP+ + GT LF+ +A L NF++
Sbjct: 99 SIDLGGTNFRVLRVQVGAGSVIVNQKVEQQPIPEELTKGTTEGLFNFVALALKNFLEGED 158
Query: 499 VYEERLALGFTFSFPLKQLGLTKGVLQRWTKGFS 600
+ ++ALGFTFSFP++Q+ ++ G L RWTKGFS
Sbjct: 159 DQDGKMALGFTFSFPVRQISVSSGSLIRWTKGFS 192
Score = 33.5 bits (73), Expect = 0.18
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = +1
Query: 613 VGEDVVQGLKDAIARRGDVQIDICAILNDTTGTL 714
VG DV Q L +A+A G + + + A++NDT GTL
Sbjct: 270 VGRDVAQCLNEALANCG-LNVRVTALVNDTVGTL 302
>01_01_0384 -
2970369-2970726,2970812-2970882,2971428-2971509,
2971757-2971818,2972308-2972401,2972502-2972569,
2972681-2972747,2972830-2972960,2973093-2973200,
2973577-2973642,2973706-2973774,2973990-2974115,
2974167-2974284,2974741-2974847,2975889-2976009,
2976162-2976235,2976955-2977051,2977564-2977679,
2978218-2978313,2978426-2978635,2979101-2979253
Length = 797
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/59 (22%), Positives = 29/59 (49%)
Frame = +1
Query: 115 MGIVVDNLQRIREECEVLKMTDKQIKEIMCRLHNDLKKGLSRADHDKATVKCWITYIQD 291
+ + L++ REE + + Q+ + N+L K ++ + + VK WI +++D
Sbjct: 456 LNAAIGRLKQTREERDQFDEANNQMIFSLKAKDNELSKSITSCNVEAGVVKTWINFLED 514
>05_01_0453 -
3592555-3592897,3592997-3593067,3593372-3593465,
3593547-3593614,3593694-3593760,3593924-3594054,
3594145-3594252,3594671-3594757,3594991-3595056,
3595564-3595630,3596116-3596192,3596358-3596417,
3597363-3597480,3597833-3597906,3598216-3598312,
3599328-3599380,3599535-3599630,3599768-3599965,
3600556-3600722,3600813-3600882,3601428-3601448,
3602851-3602982
Length = 754
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +1
Query: 136 LQRIREECEVLKMTDKQIKEIMCRLHNDLKKGLSRADHDKATVKCWITYIQD 291
L++ REE + + QI + +DL K ++ + + VK WI +++D
Sbjct: 473 LKKTREERDQFDEANNQIIFKLKTKEDDLSKSIASCNVEANVVKTWINFLED 524
>01_01_0770 - 5968042-5968281,5968799-5969156,5970975-5971384
Length = 335
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -2
Query: 689 IAHMSICTSPLLAIASLRPCTTSSPTTPEQEKPLVHLCNTPFVRPSC 549
I ++ +C +P A A+L PC +SPT P + L+ + R +C
Sbjct: 107 IEYLLLCLAPAAAAAAL-PCAATSPTPPCPLRELLREYSAAVRRVAC 152
>07_03_1468 - 26739872-26740912
Length = 346
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -2
Query: 626 TSSPTTPEQEKPLVHLCNTPFVRPSCFSGK 537
T++ TT + P+VHL ++P CFSG+
Sbjct: 185 TATTTTTTTDNPVVHLAGVILIQP-CFSGE 213
>12_01_0428 + 3374519-3375423,3376663-3376742,3377206-3377217,
3377337-3377379,3378304-3380332
Length = 1022
Score = 28.7 bits (61), Expect = 5.2
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Frame = -3
Query: 511 FLHKLRAPS*NLLNIRLCGQIEQCR--CQSLYVLVWHRFWTAYQNGFPL-NLLLKL*N 347
FLH + P L +R+CG +++ +SL+ LV + + +GF L N+L KL N
Sbjct: 850 FLHDIEPPPQLLRYLRICGHMDRLPDWVESLHDLVELQLRWTHVDGFQLFNVLCKLPN 907
>08_02_0644 -
19658270-19658626,19659142-19659218,19659256-19659430,
19659543-19659596,19659691-19659858,19660756-19660953,
19661546-19661632,19661739-19661827,19662499-19662955
Length = 553
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Frame = -2
Query: 404 ILDCISKWFSPKF---IIKTLKF-VPPKSNAKNLPLSFPLGKSC 285
+ DC+ + P F ++K K +PP+S +K+L F L +SC
Sbjct: 188 VFDCVDIYRQPAFDHPLLKNHKLQIPPRSYSKSLITHFGLQESC 231
>08_02_1360 + 26391141-26391287,26392256-26392627,26393372-26393860
Length = 335
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +1
Query: 199 MCRLHNDLKKGLSRADHDKATV-KCWITYIQDLPNGKERGKF 321
+C LH + GL+ HD A V + W Y P + RG F
Sbjct: 284 VCTLHANCCTGLANKVHDLAAVLRDWRNYTAAPPAARRRGGF 325
>10_08_0036 + 14325793-14326457,14326610-14328035
Length = 696
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -3
Query: 526 IQVPIFLHKLRAPS*NLLNIRLCGQIEQ 443
+++P FLH+LR L +IR+ GQ+ Q
Sbjct: 339 LELPTFLHQLRLNFPRLYDIRVLGQLVQ 366
>04_04_1192 + 31611804-31612113,31612235-31614058,31614098-31614842,
31615047-31616835,31617136-31617163,31617343-31617794
Length = 1715
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -2
Query: 689 IAHMSICTSPLLAIASLRPCTTSSPTTPEQEKPLVHLC 576
I H+SI +S +L L PCT S T +KP C
Sbjct: 1178 ITHLSIVSSSMLGDPLLLPCTQSEQLT-VNDKPSTFSC 1214
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,962,439
Number of Sequences: 37544
Number of extensions: 422471
Number of successful extensions: 1033
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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