Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_O17
(801 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016448-16|AAM45377.1| 394|Caenorhabditis elegans Atg (autopha... 30 1.7
AF016448-15|AAB65961.1| 412|Caenorhabditis elegans Atg (autopha... 30 1.7
Z81041-14|CAN99675.1| 684|Caenorhabditis elegans Hypothetical p... 29 5.1
Z81041-13|CAN99674.1| 647|Caenorhabditis elegans Hypothetical p... 29 5.1
Z81041-5|CAB02790.1| 715|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z81041-3|CAB02791.1| 713|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical pr... 29 5.1
U42848-2|AAA83608.2| 315|Caenorhabditis elegans Hypothetical pr... 29 5.1
AF003740-5|AAL08031.1| 195|Caenorhabditis elegans Hypothetical ... 28 6.8
AC006663-5|AAY43999.1| 490|Caenorhabditis elegans Hypothetical ... 28 6.8
AF125448-5|AAD12810.1| 188|Caenorhabditis elegans Hypothetical ... 28 8.9
>AF016448-16|AAM45377.1| 394|Caenorhabditis elegans Atg (autophagy)
related protein18, isoform b protein.
Length = 394
Score = 30.3 bits (65), Expect = 1.7
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Frame = +1
Query: 259 DSPANKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAE--IVCVS 432
D+P NK+ + +LT+ L A PG+ G HL + N + + E I C+
Sbjct: 139 DTPTNKLGVLDLTSNPGNALIAYPGSTDTG--SVHLFDAI-NLSSVSTFNAHEGTIACLK 195
Query: 433 VNDPYVMAAWGAQHNTKGKV-RMLADPSGN 519
N M A +TKG V R+ + P+G+
Sbjct: 196 FNQEGNMIATA---STKGTVIRVYSVPNGH 222
>AF016448-15|AAB65961.1| 412|Caenorhabditis elegans Atg (autophagy)
related protein18, isoform a protein.
Length = 412
Score = 30.3 bits (65), Expect = 1.7
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Frame = +1
Query: 259 DSPANKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAE--IVCVS 432
D+P NK+ + +LT+ L A PG+ G HL + N + + E I C+
Sbjct: 139 DTPTNKLGVLDLTSNPGNALIAYPGSTDTG--SVHLFDAI-NLSSVSTFNAHEGTIACLK 195
Query: 433 VNDPYVMAAWGAQHNTKGKV-RMLADPSGN 519
N M A +TKG V R+ + P+G+
Sbjct: 196 FNQEGNMIATA---STKGTVIRVYSVPNGH 222
>Z81041-14|CAN99675.1| 684|Caenorhabditis elegans Hypothetical
protein C27A7.5e protein.
Length = 684
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +1
Query: 130 GSSIIRGITAFANRASARALHISQLSMAPIKVGDQLPAADLFEDSPANKVNICELTAG 303
G ++ G A ASA + + L I G Q+P A++ D N + +TAG
Sbjct: 195 GFVVLHGTDTLAYTASALSFMMENLGKPVIITGSQIPVAEVRSDGMENLIGAL-ITAG 251
>Z81041-13|CAN99674.1| 647|Caenorhabditis elegans Hypothetical
protein C27A7.5d protein.
Length = 647
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +1
Query: 130 GSSIIRGITAFANRASARALHISQLSMAPIKVGDQLPAADLFEDSPANKVNICELTAG 303
G ++ G A ASA + + L I G Q+P A++ D N + +TAG
Sbjct: 158 GFVVLHGTDTLAYTASALSFMMENLGKPVIITGSQIPVAEVRSDGMENLIGAL-ITAG 214
>Z81041-5|CAB02790.1| 715|Caenorhabditis elegans Hypothetical
protein C27A7.5c protein.
Length = 715
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +1
Query: 130 GSSIIRGITAFANRASARALHISQLSMAPIKVGDQLPAADLFEDSPANKVNICELTAG 303
G ++ G A ASA + + L I G Q+P A++ D N + +TAG
Sbjct: 226 GFVVLHGTDTLAYTASALSFMMENLGKPVIITGSQIPVAEVRSDGMENLIGAL-ITAG 282
>Z81041-3|CAB02791.1| 713|Caenorhabditis elegans Hypothetical
protein C27A7.5a protein.
Length = 713
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +1
Query: 130 GSSIIRGITAFANRASARALHISQLSMAPIKVGDQLPAADLFEDSPANKVNICELTAG 303
G ++ G A ASA + + L I G Q+P A++ D N + +TAG
Sbjct: 224 GFVVLHGTDTLAYTASALSFMMENLGKPVIITGSQIPVAEVRSDGMENLIGAL-ITAG 280
>Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical
protein F01G4.3 protein.
Length = 1266
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -2
Query: 344 GVKAPGTANNTTFFPAVNSQIFTLLAGESSNKSAAGS*SPTL 219
G G+ N F P ++ LLAGE++ KS +G S L
Sbjct: 104 GNSIKGSPGNVPFLPGFLEELDDLLAGETTAKSTSGEESKFL 145
>U42848-2|AAA83608.2| 315|Caenorhabditis elegans Hypothetical
protein C31H1.5 protein.
Length = 315
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = -2
Query: 404 SDFSLSAFCTYPGKCVLEHPGVKAPGTANNTTFFPAVN 291
+DF A C+ K EH G + P T F PA N
Sbjct: 113 ADFVTDAACSLVRKFGHEHYGTRTPDNRELTAFHPATN 150
>AF003740-5|AAL08031.1| 195|Caenorhabditis elegans Hypothetical
protein C41D11.9 protein.
Length = 195
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 449 TYGSLTDTHTISATPSDFSLSAFCTYPGKC 360
T GS++ T + + D S CT+PG C
Sbjct: 17 TIGSISGTKDVKSKNCDGSAGLTCTFPGDC 46
>AC006663-5|AAY43999.1| 490|Caenorhabditis elegans Hypothetical
protein H24K24.2 protein.
Length = 490
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Frame = +1
Query: 121 FSQGSSIIRGITAFANRASARALHISQLSMA-------PIKVGDQLPAADLF 255
F G I+R + +F N S LH +++M P K+ + LPA F
Sbjct: 79 FMNGYDIVRFLESFLNEESRNVLHSLEITMESPFAKEWPAKINNMLPALKCF 130
>AF125448-5|AAD12810.1| 188|Caenorhabditis elegans Hypothetical
protein H14E04.3 protein.
Length = 188
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -1
Query: 423 HYFSNSIRFQFICVLYVSRQMCFRTSRGEGARHRK 319
H+F+ I FICV VS + RT+R G +++K
Sbjct: 129 HFFNIPISLYFICVFLVSSKTHKRTTR-SGRKNKK 162
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,111,343
Number of Sequences: 27780
Number of extensions: 401360
Number of successful extensions: 1035
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -