Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_O17
(801 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex det... 26 0.35
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 25 1.1
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 23 2.5
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 23 3.3
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 23 3.3
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 23 3.3
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 23 3.3
DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex det... 23 4.4
DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex det... 23 4.4
DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex det... 23 4.4
DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex det... 23 4.4
DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex det... 22 5.8
AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein. 22 5.8
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 7.6
>DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex
determiner protein.
Length = 182
Score = 26.2 bits (55), Expect = 0.35
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +3
Query: 51 YDRYNKINNK*GNYHSKNFYLLMFL 125
Y YN NN NY+ K +Y + ++
Sbjct: 91 YSNYNNYNNNYNNYNKKLYYNINYI 115
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 24.6 bits (51), Expect = 1.1
Identities = 11/39 (28%), Positives = 16/39 (41%)
Frame = +3
Query: 30 NFYHLLTYDRYNKINNK*GNYHSKNFYLLMFLTGXFDYP 146
N Y Y+ YN NN N ++K Y ++ P
Sbjct: 320 NNYKYSNYNNYNNYNNNNYNNYNKKLYYKNYIINIEQIP 358
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 23.4 bits (48), Expect = 2.5
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = +3
Query: 51 YDRYNKINNK*GNYHSKNFYLLMFL 125
Y+ YN NN N + K +Y + ++
Sbjct: 334 YNNYNNYNNNYNNNYKKLYYNINYI 358
Score = 22.6 bits (46), Expect = 4.4
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = +3
Query: 51 YDRYNKINNK*GNYHSKN 104
Y YN NN NY++ N
Sbjct: 324 YSNYNNYNNNYNNYNNYN 341
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 23.0 bits (47), Expect = 3.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 461 QAAITYGSLTDTHTISATPSDFSLSAF 381
Q AITY D T+ +PS SL+A+
Sbjct: 211 QTAITYVWKNDEGTLRKSPSLTSLNAY 237
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 23.0 bits (47), Expect = 3.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 461 QAAITYGSLTDTHTISATPSDFSLSAF 381
Q AITY D T+ +PS SL+A+
Sbjct: 211 QTAITYVWKNDEGTLRKSPSLTSLNAY 237
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 23.0 bits (47), Expect = 3.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 461 QAAITYGSLTDTHTISATPSDFSLSAF 381
Q AITY D T+ +PS SL+A+
Sbjct: 262 QTAITYVWKNDEGTLRKSPSLTSLNAY 288
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 23.0 bits (47), Expect = 3.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 461 QAAITYGSLTDTHTISATPSDFSLSAF 381
Q AITY D T+ +PS SL+A+
Sbjct: 211 QTAITYVWKNDEGTLRKSPSLTSLNAY 237
>DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 22.6 bits (46), Expect = 4.4
Identities = 9/32 (28%), Positives = 14/32 (43%)
Frame = +3
Query: 30 NFYHLLTYDRYNKINNK*GNYHSKNFYLLMFL 125
N Y Y+ YN N NY +Y + ++
Sbjct: 87 NNYKYSNYNNYNNNNYNNNNYKKLQYYNINYI 118
>DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 22.6 bits (46), Expect = 4.4
Identities = 9/32 (28%), Positives = 14/32 (43%)
Frame = +3
Query: 30 NFYHLLTYDRYNKINNK*GNYHSKNFYLLMFL 125
N Y Y+ YN N NY +Y + ++
Sbjct: 87 NNYKYSNYNNYNNNNYNNNNYKKLQYYNINYI 118
>DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 22.6 bits (46), Expect = 4.4
Identities = 9/32 (28%), Positives = 14/32 (43%)
Frame = +3
Query: 30 NFYHLLTYDRYNKINNK*GNYHSKNFYLLMFL 125
N Y Y+ YN N NY +Y + ++
Sbjct: 87 NNYKYSNYNNYNNNNYNNNNYKKLQYYNINYI 118
>DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 22.6 bits (46), Expect = 4.4
Identities = 9/32 (28%), Positives = 14/32 (43%)
Frame = +3
Query: 30 NFYHLLTYDRYNKINNK*GNYHSKNFYLLMFL 125
N Y Y+ YN N NY +Y + ++
Sbjct: 87 NNYKYSNYNNYNNNNYNNNNYKKLQYYNINYI 118
>DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex
determiner protein.
Length = 191
Score = 22.2 bits (45), Expect = 5.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 30 NFYHLLTYDRYNKINNK*GNYHSKNFYLLMFL 125
N Y+ Y+ YN NN NY K +Y + ++
Sbjct: 94 NNYNNNNYNNYNYNNNNYNNY-KKLYYNINYI 124
>AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein.
Length = 554
Score = 22.2 bits (45), Expect = 5.8
Identities = 12/34 (35%), Positives = 13/34 (38%)
Frame = +3
Query: 507 SQRQLHQGSGPGHQSAAARRFPLQKVLHGHR*QQ 608
SQ H+GS P HQ P H H Q
Sbjct: 324 SQYHPHRGSSPHHQHGNHTMGPTMGPPHHHHHHQ 357
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.6
Identities = 9/33 (27%), Positives = 15/33 (45%)
Frame = -2
Query: 398 FSLSAFCTYPGKCVLEHPGVKAPGTANNTTFFP 300
+ S T+ G C+ PG+ + T+FP
Sbjct: 87 YQTSVVVTHDGSCLYVPPGIFKSTCKIDITWFP 119
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,612
Number of Sequences: 438
Number of extensions: 4609
Number of successful extensions: 19
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -