Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_O16
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein Spo14|Sch...    34   0.022
SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces pom...    29   0.64 
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    27   1.9  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    27   1.9  
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    27   2.6  
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    27   3.4  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    26   5.9  

>SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein
           Spo14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 33.9 bits (74), Expect = 0.022
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 245 VDFPLYTLQTLTNRHVIVAGGGGASNTGVANGFEI 349
           + FP Y+L  + N  + V GGGG + +GV N  ++
Sbjct: 6   LSFPAYSLCWINNHQMAVGGGGGTTKSGVKNKLKL 40


>SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 290

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 22/81 (27%), Positives = 36/81 (44%)
 Frame = +2

Query: 434 SVRSIQNRTYLTAGQESHCQLYKVNIRMVDAAEMRRGSFRAENGLVRRRRRTVSENDNIS 613
           S    +N +YL     S  +  K+N+R    + +R       +GL   +R   S    + 
Sbjct: 122 SEADFENCSYLFRTALSELRSEKINMRKDQISSLR-------SGLFSNQREVESLEQLVH 174

Query: 614 KKNNVSNTEKRMSFEIRPCDS 676
           ++ N  NTE +M FE R  D+
Sbjct: 175 EQLNKLNTESKMEFENRKNDT 195


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -3

Query: 396 ITSSATNLFPLCDSSNISNPFATPVFDAPPPPATMTCRF 280
           I SSAT+ FP     ++S   +T +    PPPA+ T  F
Sbjct: 162 IYSSATSSFPYSTDVSVSTGTSTDIVTL-PPPASSTSSF 199


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +2

Query: 536 RRGSFRAENGLVRRRRRTVSENDNISKKNNVSNTEKRMSFE 658
           R GS   E   V+RRR  +SE +    K   S+ EK  SFE
Sbjct: 22  RNGSIHGEITDVKRRR--LSERNGYGDKKGSSSKEKTSSFE 60


>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 269 QTLTNRHVIVAGGGGASNTGV 331
           +TLT RH+ + G GGA  TGV
Sbjct: 81  RTLTARHIQMIGIGGAIGTGV 101


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 563 GLVRRRRRTVSENDNISKKNNV 628
           G VRR    VS ND ++KKN++
Sbjct: 456 GTVRRPPSLVSSNDELNKKNDI 477


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -3

Query: 393 TSSATNLFPLCDSSNISNPFATPVFDAPPPPATMTC 286
           T S ++   L D++N++    TP+ D P P ++ TC
Sbjct: 372 TGSESSAVSLSDTTNLN----TPISDIPSPGSSTTC 403


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,681,657
Number of Sequences: 5004
Number of extensions: 53889
Number of successful extensions: 168
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)