Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_O16
(692 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0425 - 3347604-3347708,3348394-3348466,3349917-3350581,335... 31 0.87
04_01_0576 + 7466032-7466802,7468382-7468444,7469043-7469122,746... 30 1.5
03_05_0349 + 23356871-23356907,23356995-23357063,23357236-233574... 30 1.5
04_04_1596 + 34684943-34686340,34688085-34688175,34688290-346883... 30 2.0
11_06_0397 + 23110842-23111164,23111714-23111909,23114120-231144... 29 3.5
06_01_0651 + 4711369-4712431,4713069-4713763 29 4.6
11_01_0474 - 3666236-3668050 28 6.1
09_06_0320 - 22297579-22297760,22298433-22299358,22299422-222997... 28 6.1
05_01_0063 + 446761-447681 28 6.1
10_08_0731 + 20161962-20163628,20163721-20163862,20164181-201644... 28 8.1
06_01_0915 - 7054701-7055809,7056062-7056359 28 8.1
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 28 8.1
>05_01_0425 -
3347604-3347708,3348394-3348466,3349917-3350581,
3350609-3351088,3351253-3351534
Length = 534
Score = 31.1 bits (67), Expect = 0.87
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Frame = +2
Query: 365 NGKRFVAEEVMRHETGPNVVMTCSVRSIQNRTYLTAGQESHCQLYKVNIRMVDAAEMRRG 544
NG V + E P V + + R + AGQ + QL + VDAA+ R G
Sbjct: 157 NGGEAVGAVTAQQEAAPGVRGAAAWATAPGRRTVRAGQSAAAQLAQRPGAGVDAADRRPG 216
Query: 545 SFRAENGL-VRRRRRTVSEND 604
S + G +RR V + +
Sbjct: 217 STTLQGGTRLRRGEEAVGDGE 237
>04_01_0576 +
7466032-7466802,7468382-7468444,7469043-7469122,
7469505-7469622,7470035-7470067,7470400-7470474,
7470887-7471043,7471142-7471230,7472041-7472294,
7472977-7473148,7473250-7473333,7473626-7473730,
7474055-7474363,7474622-7474756,7476236-7476317,
7476423-7476502,7476622-7476783,7477071-7477138,
7478422-7478502,7478634-7478760,7478816-7478879,
7480808-7480854,7481042-7481335
Length = 1149
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = -3
Query: 414 GPVSWRITSSATNLFPLCDSSN---ISNPFATPVFDAPPPPATMTC 286
G V IT+ N P SS+ ++ P TP+ DAPPPP C
Sbjct: 28 GGVPQSITALLNNPLPSASSSSYYWLTWPPPTPLPDAPPPPPPHPC 73
>03_05_0349 +
23356871-23356907,23356995-23357063,23357236-23357424,
23358148-23358249,23358451-23358582,23359499-23359638,
23360169-23360252,23360608-23360748,23361815-23361916,
23362239-23362409,23362452-23362571
Length = 428
Score = 30.3 bits (65), Expect = 1.5
Identities = 10/49 (20%), Positives = 24/49 (48%)
Frame = +2
Query: 308 GGASNTGVANGFEIFELSHNGKRFVAEEVMRHETGPNVVMTCSVRSIQN 454
GG + + + H+G R +A+ ++ H+ P++ M C + + +
Sbjct: 124 GGLARQSTPGRTSLLKAVHSGHRGIAKYLLNHDANPDLAMCCGLTPLHS 172
>04_04_1596 +
34684943-34686340,34688085-34688175,34688290-34688354,
34688530-34688581,34688747-34688829,34688942-34689035,
34689468-34690051
Length = 788
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -3
Query: 369 PLCDSSNISNPFATPVFDAPPPPATMTCRFVKVWSV*SGKSTLANNPS 226
P SS+ +P +P +PP PA + + S GK LA NPS
Sbjct: 123 PRVSSSSPRSPTPSPPSSSPPRPAPVVAAAEEPRSSGHGKPPLARNPS 170
>11_06_0397 +
23110842-23111164,23111714-23111909,23114120-23114410,
23116292-23116297
Length = 271
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Frame = +2
Query: 278 TNRHVIVAGGGGASNTGVANGFEIF-----ELSHNGKRFVAEEV 394
TNRH++ GG G V G + E+SH G R A+EV
Sbjct: 228 TNRHLLGTGGFGTVYKAVIRGATVAVKITNEISHRGVRAFAQEV 271
>06_01_0651 + 4711369-4712431,4713069-4713763
Length = 585
Score = 28.7 bits (61), Expect = 4.6
Identities = 33/137 (24%), Positives = 55/137 (40%), Gaps = 1/137 (0%)
Frame = +2
Query: 224 SDGLLAKVDFPLYTLQTLTNRHVIVAGGGGASNTGVANGFEIFELSHNGKRFVAEEVMRH 403
S GLLA +D Y +TN +VAG G + + + + H+ +R + ++
Sbjct: 197 SSGLLASLD-DAYA--HVTNSLSLVAGRRGGGGSAASFAAAVANIIHHNRRLLDDDDNDD 253
Query: 404 ETGPNVVMTCSVRSIQNRTYLTAGQESHCQLYKVNIRMVDAAEMRRGSFRAENGLVRRRR 583
G N S S +N +T ++ N R V A + A ++R R
Sbjct: 254 YNGGNDDDDNSNNSGENTVVITVAKDG-----SGNYRTVGEAVAAAPNNSAARTVIRVRA 308
Query: 584 RTVSENDNISK-KNNVS 631
T EN + K N++
Sbjct: 309 GTYEENVEVPPYKTNIA 325
>11_01_0474 - 3666236-3668050
Length = 604
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 554 AENGLVRRRRRTVSENDNISKKNNVSNTEKRMSFEI 661
A GL+RRRRR +ND + K V+ + + E+
Sbjct: 170 ARTGLLRRRRRRCGDNDLVVSKLTVTEGDDGVDAEL 205
>09_06_0320 -
22297579-22297760,22298433-22299358,22299422-22299747,
22300591-22300660,22301632-22301726,22301917-22302048,
22302154-22302222,22302953-22303051,22303169-22303253,
22303353-22303453,22303660-22303728,22303861-22303901,
22304085-22304303,22304444-22304470,22304562-22304660,
22304898-22305106,22305382-22305485,22305753-22305894,
22305991-22306289,22306508-22306903
Length = 1229
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = -2
Query: 544 SSSHFSSIHHADVHLVQLTVALLSRCEIRPVLDAPYGTRHHDIRTSLMA 398
+ +FS H ++ + + S + +D PY TR HD R +M+
Sbjct: 364 AKQYFSDCHSLNLLFNEASTGANSNAAV--AMDQPYSTRKHDTRDDIMS 410
>05_01_0063 + 446761-447681
Length = 306
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = -3
Query: 354 SNISNPFATPVFDA--PPPPATMTCRFVKVWSV 262
S+ S P A + D PPPPAT C ++ W +
Sbjct: 273 SSASAPAAAMLLDGSPPPPPATGFCLYLYAWKL 305
>10_08_0731 + 20161962-20163628,20163721-20163862,20164181-20164490,
20164566-20166466,20166557-20166650,20166953-20167440,
20167919-20168599,20168870-20168944,20170148-20170210,
20170588-20170633,20171373-20171420,20171484-20171557
Length = 1862
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 308 GGASNTGVANGFEIFELSHNGKRFVAE 388
GGA +G+ I +L H+GK +VAE
Sbjct: 1216 GGAILSGLREAVRIIDLVHSGKDYVAE 1242
>06_01_0915 - 7054701-7055809,7056062-7056359
Length = 468
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 263 TLQTLTNRHVIVAGGGGASNTGVANGFEIFELSH 364
TL +T RHV+ AG G + + F F +H
Sbjct: 318 TLAEITRRHVLAAGAGTSKSKSKVVAFTTFSPAH 351
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = -3
Query: 447 MLLTEHVITTLGPVSWRITSSATNLFPLCDSSNISNPFATPVFDAPPPPA 298
M ++ H ITT+ R+ + + + P ++ +++ V APPPPA
Sbjct: 232 MRMSSHEITTIAGAG-RVENKVSTIAPSAAAAAVASAGGGQVPAAPPPPA 280
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,831,013
Number of Sequences: 37544
Number of extensions: 384328
Number of successful extensions: 1343
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1341
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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