Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_O16
         (692 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.6  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   2.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.4  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 13/53 (24%), Positives = 27/53 (50%)
 Frame = -1

Query: 614  LIYYHFQRPSVSSASQAHSQPGNFLVSFQQHPPCGCSPCTADSGSLVPL*DTS 456
            ++Y  F  P  +S S  ++QP     S ++ P    +   A+ GS++ + ++S
Sbjct: 856  MMYKPFLIPEQTSISHENNQPTMNKCSDRKRPASQATSVKAEPGSIMAMSESS 908


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -3

Query: 429 VITTLGPVSWRI-TSSATNLFPL 364
           +ITT G  +WR+  S+ T L P+
Sbjct: 7   IITTTGLENWRVNNSNYTELLPI 29


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 394 DAP*DWS*CRDDVFRKEHPEPDVSHSGTREPLS 492
           DAP D     D V  +E+PE     SG  E ++
Sbjct: 685 DAPADQEGDDDQVDEREYPESHGHDSGQDEDMA 717


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,340
Number of Sequences: 438
Number of extensions: 3763
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)