Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_O12
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po...    68   1e-12
SPCC18.06c |caf1|pop2|CCR4-Not complex subunit Caf1|Schizosaccha...    34   0.017
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    28   1.1  
SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual     26   5.9  

>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 427

 Score = 67.7 bits (158), Expect = 1e-12
 Identities = 47/175 (26%), Positives = 86/175 (49%), Gaps = 1/175 (0%)
 Frame = +2

Query: 161 EVIRKNFKEALPLVAASVKKADFLVIDTEFTGIINGRDVSMFDTPEEYYKCTQKGSSEFL 340
           E+  KNF E L  +   V  A ++ ID EF+G++   +++  +T ++ Y+  +K S  + 
Sbjct: 2   EIHGKNFLETLKELEKHVDSAHYVSIDCEFSGLLRDFNLNNKNTLQDRYELLRKSSIRYT 61

Query: 341 LIQFGLCAFH-WNHKEKHYMNDAYNFYLFPRGSPGPDRMFMCQSSSLDFLASQGFDFNKL 517
           ++Q G+   +  N+ +   +    N     +      R F  ++SS+ FL  QGFDFNK 
Sbjct: 62  ILQIGITFIYLQNNGKSSCIPVNINVSPLVKDELHLKRDFCSEASSIKFLIQQGFDFNKQ 121

Query: 518 IKDGISYMTVPIECKLRENLTERQKTYSKGKDSIKVPDEHKVYVEDICNQVQQFL 682
           + +G+ Y++   E  L + + ER  T       +   DE    + D  NQ++ +L
Sbjct: 122 LTEGVPYLSRIEERNLIDKVNER-STDDLTSSILDACDEE--ILVDARNQIKNWL 173


>SPCC18.06c |caf1|pop2|CCR4-Not complex subunit
           Caf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 34.3 bits (75), Expect = 0.017
 Identities = 17/67 (25%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
 Frame = +2

Query: 161 EVIRKNFKEALPLVAASVKKADFLVIDTEFTGIINGRDVSMFDTPEEYYKCTQKGSSEFL 340
           +V   N ++ + L+ + +++   + +DTEF G++  R + +F + ++Y+  T + + + L
Sbjct: 24  DVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVV-ARPLGVFKSSDDYHYQTLRANVDSL 82

Query: 341 -LIQFGL 358
            +IQ GL
Sbjct: 83  KIIQIGL 89


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 401 RSCNASPYDSSEK-HTGQTVLVEIPKNLSECICNTPLVCQ 285
           RS NASP+DS +  H+G ++ +E   +    + N   V Q
Sbjct: 252 RSANASPFDSCDSFHSGSSIPIEPVSSRQSSVVNNNSVQQ 291


>SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/56 (26%), Positives = 23/56 (41%)
 Frame = +2

Query: 392 YMNDAYNFYLFPRGSPGPDRMFMCQSSSLDFLASQGFDFNKLIKDGISYMTVPIEC 559
           YMN+A+   L+          F    +   +L      ++KLI D   +MT   EC
Sbjct: 191 YMNEAFTIALYALVCRELHEPFRFPGNEKFYLGFDDISYSKLIADFQLWMTFKAEC 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,827,879
Number of Sequences: 5004
Number of extensions: 58924
Number of successful extensions: 177
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)