Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_O12
(697 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0806 + 21403911-21404203,21406377-21406507,21406851-214069... 72 4e-13
02_05_1070 + 33872845-33873726 42 6e-04
10_01_0149 + 1745355-1746230 37 0.018
09_04_0126 + 14874739-14875581 35 0.054
08_02_0807 + 21411799-21412665 32 0.50
01_01_1149 - 9134390-9134600,9134732-9134790,9135650-9135724,913... 31 1.2
06_03_0342 + 19737951-19738772 30 1.5
04_04_0437 + 25193263-25194627 29 2.7
11_04_0457 + 17916177-17916526,17917397-17917523,17917887-179182... 29 3.5
05_02_0021 - 5674587-5674799,5674898-5675031,5675129-5675207,567... 28 8.1
>08_02_0806 +
21403911-21404203,21406377-21406507,21406851-21406963,
21407478-21407594,21407611-21407803,21407890-21408105,
21408272-21408909
Length = 566
Score = 72.1 bits (169), Expect = 4e-13
Identities = 46/128 (35%), Positives = 63/128 (49%), Gaps = 5/128 (3%)
Frame = +2
Query: 161 EVIRKNFKEALPLVAASVKKADFLVIDTEFTGIING-RDVSMFDTPEEYYKCTQKGSSEF 337
+V ++NF EA+ +AA V+ D++ I + TG G R DTPE Y + + F
Sbjct: 15 QVTKRNFAEAVQDLAAHVEACDYVAIAAQRTGAPTGWRRALPVDTPETAYLKAKLAAESF 74
Query: 338 LLIQFGLCAFHWNHKEKHYMND-AYNFYLFPRGSPG---PDRMFMCQSSSLDFLASQGFD 505
+ F +C F + + YNF+LFPR P F CQSS L +A GFD
Sbjct: 75 QPLHFAICPFRVDATSPSTLVAYPYNFHLFPRDELQLGMPAYSFSCQSSYLSSMAHSGFD 134
Query: 506 FNKLIKDG 529
FN I DG
Sbjct: 135 FNMCIYDG 142
>02_05_1070 + 33872845-33873726
Length = 293
Score = 41.5 bits (93), Expect = 6e-04
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +2
Query: 161 EVIRKNFKEALPLVAASVKKADFLVIDTEFTGIINGRDVSMFDTPEEYYKCTQKGSSEFL 340
EV N +E L+ V + F+ +DTEF GI+ R V F +P +Y T K + + L
Sbjct: 32 EVWADNLEEEFALIRDVVDEFPFVAMDTEFPGIV-CRPVGAFRSPADYNYATLKANVDML 90
Query: 341 -LIQFGL 358
LIQ GL
Sbjct: 91 HLIQLGL 97
>10_01_0149 + 1745355-1746230
Length = 291
Score = 36.7 bits (81), Expect = 0.018
Identities = 28/133 (21%), Positives = 56/133 (42%), Gaps = 1/133 (0%)
Frame = +2
Query: 161 EVIRKNFKEALPLVAASVKKADFLVIDTEFTGIINGRDVSMFDTPEEYYKCTQKGSSEFL 340
+V N + L+ + + F+ +DT+F G+++ T ++ Y + + E
Sbjct: 35 KVTAVNLHREMSLIRSLMPTFPFVAVDTQFPGVVHPHPRGAGVTADDRYAAVRANADELC 94
Query: 341 LIQFGLCAFHWNHKEKHYMNDAYNFYLFPRGSPGPD-RMFMCQSSSLDFLASQGFDFNKL 517
L+Q G+ + + ++ A +++ G D R S+ FL +QGFDF
Sbjct: 95 LLQLGITLSAADGRLP--VDGALVEFMWDFDFAGFDARYHRHAPESVQFLRAQGFDFEAA 152
Query: 518 IKDGISYMTVPIE 556
G+ + E
Sbjct: 153 RLAGVPALAFAAE 165
>09_04_0126 + 14874739-14875581
Length = 280
Score = 35.1 bits (77), Expect = 0.054
Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 2/125 (1%)
Frame = +2
Query: 161 EVIRKNFKEALPLVAASVKKADFLVIDTEFTGIINGRDVSMFDTPEEYYKCTQKGSSEFL 340
EV N + ++ V ++ +DTEF G++ R + F + ++ T K + + L
Sbjct: 16 EVWEDNLEAEFAVIREIVDDFPYVAMDTEFPGVV-CRPLGTFKSNADFNYATLKANVDML 74
Query: 341 -LIQFGLCAFHWNHKEKHYMNDAYNFYLFPRGSPGPD-RMFMCQSSSLDFLASQGFDFNK 514
LIQ GL F H + ++ G D R + + S+D L G DF +
Sbjct: 75 KLIQLGL-TFSNEHGGLPSLGPEGRPCVWQFNFRGFDPRTDVAAADSIDLLRRSGIDFTR 133
Query: 515 LIKDG 529
DG
Sbjct: 134 HSADG 138
>08_02_0807 + 21411799-21412665
Length = 288
Score = 31.9 bits (69), Expect = 0.50
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +2
Query: 161 EVIRKNFKEALPLVAASVKKADFLVIDTEFTGIINGRDVSMFDTPEEY-YKCTQKGSSEF 337
EV N + + + V + ++ +DTEF GI+ R V F T +E+ Y + +
Sbjct: 20 EVWAGNLEAEIAAIRDEVDRYPYVAMDTEFPGIV-CRPVGNFRTTDEFNYANLEANVNML 78
Query: 338 LLIQFGL 358
LIQ GL
Sbjct: 79 KLIQLGL 85
>01_01_1149 -
9134390-9134600,9134732-9134790,9135650-9135724,
9135815-9135934,9136012-9136183,9136277-9136335,
9136516-9136572,9136900-9136998,9137088-9137114,
9137607-9137649,9137779-9138023
Length = 388
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -2
Query: 696 NCPSXKNCCTWLQMSSTYTLCSS 628
+CPS NC W Q Y LCS+
Sbjct: 13 SCPSAANCAKWAQTYLKYCLCST 35
>06_03_0342 + 19737951-19738772
Length = 273
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/81 (27%), Positives = 34/81 (41%)
Frame = +2
Query: 290 TPEEYYKCTQKGSSEFLLIQFGLCAFHWNHKEKHYMNDAYNFYLFPRGSPGPDRMFMCQS 469
T EE Y+ + + E +Q GL + +N F + G MC+
Sbjct: 57 TAEERYQVVRANADELKPLQLGLAV---RTADGGRFAWEFNLNEFDLAADGD----MCEP 109
Query: 470 SSLDFLASQGFDFNKLIKDGI 532
S+D+L +G DFN L G+
Sbjct: 110 GSVDYLRHRGMDFNALPWSGV 130
>04_04_0437 + 25193263-25194627
Length = 454
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/73 (26%), Positives = 33/73 (45%)
Frame = -3
Query: 491 KLRNLSWNSDT*TFCLGRGCHEETGKNYMRRSCNASPYDSSEKHTGQTVLVEIPKNLSEC 312
+LRNL+ +++ T LG C + + + N PY +++ + S C
Sbjct: 356 RLRNLTLSNNYFT-SLGSCCWDLIKEGKLNVDRNCIPYAPNQRSHDECAAFFHRTKTSAC 414
Query: 311 ICNTPLVCQTSKH 273
CNT + C +KH
Sbjct: 415 PCNTYVPCGHNKH 427
>11_04_0457 +
17916177-17916526,17917397-17917523,17917887-17918287,
17918496-17918704,17919328-17919449,17920437-17920562,
17920675-17920801,17920945-17921000
Length = 505
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = +2
Query: 440 GPDRMFMCQSSSLDFLASQGFDFNKLIKDGISYMTVPIECKLRENLTERQKTYSKGKDSI 619
G R S+SLD L + D+ + +S M P+E E + ++ KGK+ +
Sbjct: 106 GSSRPAAYGSTSLDMLCDRTIDYT----EQLSVMGKPVELTANERCKKTERREKKGKNEV 161
Query: 620 KV 625
+V
Sbjct: 162 EV 163
>05_02_0021 -
5674587-5674799,5674898-5675031,5675129-5675207,
5675737-5675799,5676420-5676482,5676557-5676673,
5676756-5676803,5676918-5677103,5677948-5678047,
5678323-5678562,5678583-5678686
Length = 448
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = +2
Query: 200 VAASVKKADFLVIDTEFTGIINGRDVSMFDTPEEYYKCTQKGSSEFLLIQFGLC 361
V A V K + D++F G D M YY CTQKG ++ + LC
Sbjct: 86 VLAGVAKLKSIHTDSDFGGF--SPDEYMHIYTLVYYMCTQKGHKDYPKELYHLC 137
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,372,555
Number of Sequences: 37544
Number of extensions: 343053
Number of successful extensions: 822
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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