Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_O12
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117195-18|CAB55029.1|  490|Caenorhabditis elegans Hypothetical...    61   6e-10
Z74474-1|CAA98954.2|  566|Caenorhabditis elegans Hypothetical pr...    49   3e-06
AF025461-6|AAK84545.1|  335|Caenorhabditis elegans Hypothetical ...    31   1.0  
U50193-6|AAL32262.1| 1175|Caenorhabditis elegans Cytokinesis def...    28   5.5  
U50193-5|AAL32263.1| 1178|Caenorhabditis elegans Cytokinesis def...    28   5.5  
AF469173-1|AAL79016.1| 1175|Caenorhabditis elegans ubiquitin c-t...    28   5.5  
U21854-1|AAA87454.1|  310|Caenorhabditis elegans cCAF1 protein p...    28   7.3  
AL132860-28|CAB60501.1|  310|Caenorhabditis elegans Hypothetical...    28   7.3  
Z81547-1|CAB04459.1|  354|Caenorhabditis elegans Hypothetical pr...    27   9.7  
U55370-2|AAA97994.1|  561|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>AL117195-18|CAB55029.1|  490|Caenorhabditis elegans Hypothetical
           protein Y57A10A.25 protein.
          Length = 490

 Score = 61.3 bits (142), Expect = 6e-10
 Identities = 41/141 (29%), Positives = 63/141 (44%), Gaps = 2/141 (1%)
 Frame = +2

Query: 161 EVIRKNFKEALPLVAASVKKADFLVIDTEFTGIINGRDVSMFDTPEEYYKCTQKGSSEFL 340
           EV R NF +  P +   +K ADF  ID E +G+  G+ +   D  E Y        +  +
Sbjct: 33  EVNRDNFAKIWPYLLVCIKSADFTAIDLELSGL-GGKGLRSRDIAERYQAIRDAAHTRSI 91

Query: 341 LIQFGLCAFHWNHKEKHYMNDAYNFYLFPRGSPGPDRMFMCQSSSLDFLASQGFDFNKLI 520
           L   G+      HK +      Y   +F       ++ F  + S+L FLA   FDFN+LI
Sbjct: 92  L-SVGIATMKLTHKSEKRRALRYETQVF-NILTFSEKPFTIEPSALQFLAKHSFDFNRLI 149

Query: 521 KDGISYM--TVPIECKLRENL 577
           + G+ +     P++   RE L
Sbjct: 150 QSGVRFQGANCPLKTLFRELL 170


>Z74474-1|CAA98954.2|  566|Caenorhabditis elegans Hypothetical
           protein K10C8.1 protein.
          Length = 566

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 35/127 (27%), Positives = 55/127 (43%)
 Frame = +2

Query: 164 VIRKNFKEALPLVAASVKKADFLVIDTEFTGIINGRDVSMFDTPEEYYKCTQKGSSEFLL 343
           V   NF +A   +   +   DF+ ID EF G ++   +S+ DT E  Y+  +    ++  
Sbjct: 4   VTDSNFLDAAGTLRKGLLYCDFVAIDFEFLG-LDVSAISLHDTVESRYQILRDNVIKYRP 62

Query: 344 IQFGLCAFHWNHKEKHYMNDAYNFYLFPRGSPGPDRMFMCQSSSLDFLASQGFDFNKLIK 523
            Q GL  F      + Y  D Y+  LF R     D        S+ FL    F+ N++  
Sbjct: 63  CQLGLTLFK-QKSNRAYKADTYSVPLFQRFG---DNDTSISLPSMRFLVKNKFNLNQVFM 118

Query: 524 DGISYMT 544
           DG+ + T
Sbjct: 119 DGVEFCT 125


>AF025461-6|AAK84545.1|  335|Caenorhabditis elegans Hypothetical
           protein M01D1.10 protein.
          Length = 335

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +2

Query: 485 LASQGFDFNK-LIKDGISYMTVPIECKLRENLTERQKTYSKGKDSIKVPDEHKVYV 649
           +  QG  FN+ +I +GI Y T PIE K+R         Y++G   I++  E KV +
Sbjct: 258 IPKQGTHFNQDIILEGIQYETAPIERKVR-----ILNKYTRGGADIQMSHESKVTI 308


>U50193-6|AAL32262.1| 1175|Caenorhabditis elegans Cytokinesis defect
           protein 3, isoforma protein.
          Length = 1175

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +2

Query: 287 DTPEEYYKCTQKGSSEFLLIQFGLCAFHWNHKEKHYMNDAYNFYL 421
           + PEE+   T+  + +  L+ FG+    W  + + Y+N+ Y+  L
Sbjct: 244 NVPEEHQTVTKSSNGKSALVDFGI----WAQENEKYVNEYYSMAL 284


>U50193-5|AAL32263.1| 1178|Caenorhabditis elegans Cytokinesis defect
           protein 3, isoformb protein.
          Length = 1178

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +2

Query: 287 DTPEEYYKCTQKGSSEFLLIQFGLCAFHWNHKEKHYMNDAYNFYL 421
           + PEE+   T+  + +  L+ FG+    W  + + Y+N+ Y+  L
Sbjct: 244 NVPEEHQTVTKSSNGKSALVDFGI----WAQENEKYVNEYYSMAL 284


>AF469173-1|AAL79016.1| 1175|Caenorhabditis elegans ubiquitin
           c-terminal hydrolase protein.
          Length = 1175

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +2

Query: 287 DTPEEYYKCTQKGSSEFLLIQFGLCAFHWNHKEKHYMNDAYNFYL 421
           + PEE+   T+  + +  L+ FG+    W  + + Y+N+ Y+  L
Sbjct: 244 NVPEEHQTVTKSSNGKSALVDFGI----WAQENEKYVNEYYSMAL 284


>U21854-1|AAA87454.1|  310|Caenorhabditis elegans cCAF1 protein
           protein.
          Length = 310

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 28/124 (22%), Positives = 51/124 (41%), Gaps = 1/124 (0%)
 Frame = +2

Query: 164 VIRKNFKEALPLVAASVKKADFLVIDTEFTGIINGRDVSMFDTPEEY-YKCTQKGSSEFL 340
           V   N +E    +   V+   ++ +DTEF G++    +  F + E++ Y+      +   
Sbjct: 26  VYMSNVEEEFARIRGFVEDYPYVAMDTEFPGVV-ATPLGTFRSKEDFNYQQVFCNVNMLK 84

Query: 341 LIQFGLCAFHWNHKEKHYMNDAYNFYLFPRGSPGPDRMFMCQSSSLDFLASQGFDFNKLI 520
           LIQ G    +    +K  +    + + F       + MF     S++ L   G DF  L 
Sbjct: 85  LIQVGFAMVN----DKGELPPTGDVWQFNFNFSFAEDMF--SHESVEMLRQAGIDFTLLQ 138

Query: 521 KDGI 532
            +GI
Sbjct: 139 NNGI 142


>AL132860-28|CAB60501.1|  310|Caenorhabditis elegans Hypothetical
           protein Y56A3A.20 protein.
          Length = 310

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 28/124 (22%), Positives = 51/124 (41%), Gaps = 1/124 (0%)
 Frame = +2

Query: 164 VIRKNFKEALPLVAASVKKADFLVIDTEFTGIINGRDVSMFDTPEEY-YKCTQKGSSEFL 340
           V   N +E    +   V+   ++ +DTEF G++    +  F + E++ Y+      +   
Sbjct: 26  VYMSNVEEEFARIRGFVEDYPYVAMDTEFPGVV-ATPLGTFRSKEDFNYQQVFCNVNMLK 84

Query: 341 LIQFGLCAFHWNHKEKHYMNDAYNFYLFPRGSPGPDRMFMCQSSSLDFLASQGFDFNKLI 520
           LIQ G    +    +K  +    + + F       + MF     S++ L   G DF  L 
Sbjct: 85  LIQVGFAMVN----DKGELPPTGDVWQFNFNFSFAEDMF--SHESVEMLRQAGIDFTLLQ 138

Query: 521 KDGI 532
            +GI
Sbjct: 139 NNGI 142


>Z81547-1|CAB04459.1|  354|Caenorhabditis elegans Hypothetical
           protein F53F8.1 protein.
          Length = 354

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +2

Query: 278 SMFDTPEEYYKCTQKGSSEFLLIQFGLCAFHWNHKEKHYMNDAYNFY 418
           S+F  PEE Y      SS     Q      H  H ++HY   +++ Y
Sbjct: 48  SLFCRPEEMYSSIVPSSSNGYYHQSQYQNAHHQHHQQHYHQQSHHHY 94


>U55370-2|AAA97994.1|  561|Caenorhabditis elegans Hypothetical
           protein K03B4.6 protein.
          Length = 561

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 365 KHTGQTVLVEIPKNLSECICNTPLVCQTS 279
           KH G++ +V+  KN +   C T + CQ S
Sbjct: 288 KHCGESSVVDFQKNAATFNCYTSIKCQES 316


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,648,306
Number of Sequences: 27780
Number of extensions: 332656
Number of successful extensions: 883
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)