Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_O12
         (697 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   2.8  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               22   4.8  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   4.8  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   8.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   8.5  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 7/27 (25%), Positives = 17/27 (62%)
 Frame = +2

Query: 539 MTVPIECKLRENLTERQKTYSKGKDSI 619
           MT  ++C  R++  +R+  +  GK+++
Sbjct: 49  MTYSMDCYFRQSWVDRRLAFQGGKETL 75


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 633 NIRCMLKTFATKYSSFXK 686
           N++C LK F TK+    K
Sbjct: 54  NLKCYLKCFMTKHGILDK 71


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = -3

Query: 536 RRFHLLLIY*NQNPAKLRNLSWNSDT*TF--CLGRGCHEETGKNYMRRSCNASPYDSSEK 363
           ++FH   ++ + NP  ++  + +  T +    L          NY ++  + SP  SS +
Sbjct: 11  QQFHHQQLFSSANPGTIQACTTSPATASLESSLSAAAVAAAAVNYAQQHNSPSPTGSSPQ 70

Query: 362 HTGQT 348
           H+G +
Sbjct: 71  HSGSS 75


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 395 CNASPYDSSEKHTGQTVLVEIPKNLS 318
           CN    D    HTG++++V   + LS
Sbjct: 59  CNMENVDPLGIHTGESIVVAPSQTLS 84


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 188 ALPLVAA-SVKKADFLVIDTEFTGIINGRDVSMFDTPEEYYKCTQKGSS 331
           A+ +VA+ +   A FLV++   T +    D  + +T E     T KGS+
Sbjct: 647 AMIIVASYTANLAAFLVLERPKTKLTGINDARLRNTMENLTCATVKGSA 695


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,159
Number of Sequences: 438
Number of extensions: 4057
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)