Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_O11
         (321 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81070-5|CAB02999.2|   84|Caenorhabditis elegans Hypothetical pr...    27   2.3  
AL117200-14|CAJ85779.1|  465|Caenorhabditis elegans Hypothetical...    26   7.0  
AL117200-12|CAB60583.1|  461|Caenorhabditis elegans Hypothetical...    26   7.0  
AL117200-11|CAD54172.1|  530|Caenorhabditis elegans Hypothetical...    26   7.0  

>Z81070-5|CAB02999.2|   84|Caenorhabditis elegans Hypothetical
           protein F26E4.6 protein.
          Length = 84

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +2

Query: 2   LPFXIHNRYKLTLYFILYAGSGLSAPYLITRHQLLK 109
           LPF + N++      + +   G  AP+++  +QL K
Sbjct: 46  LPFHVTNKWGFAAKAVTFLAIGFWAPFIVVEYQLRK 81


>AL117200-14|CAJ85779.1|  465|Caenorhabditis elegans Hypothetical
           protein Y50E8A.4c protein.
          Length = 465

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 2   LPFXIHNRYKLTLYFILYAGSGLSAPYLITRHQLLKK 112
           L +   +R    LYFI   G GL A  L+T  +L K+
Sbjct: 197 LQYFNDSRIHACLYFISPTGHGLKALDLVTLRELAKR 233


>AL117200-12|CAB60583.1|  461|Caenorhabditis elegans Hypothetical
           protein Y50E8A.4b protein.
          Length = 461

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 2   LPFXIHNRYKLTLYFILYAGSGLSAPYLITRHQLLKK 112
           L +   +R    LYFI   G GL A  L+T  +L K+
Sbjct: 197 LQYFNDSRIHACLYFISPTGHGLKALDLVTLRELAKR 233


>AL117200-11|CAD54172.1|  530|Caenorhabditis elegans Hypothetical
           protein Y50E8A.4a protein.
          Length = 530

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 2   LPFXIHNRYKLTLYFILYAGSGLSAPYLITRHQLLKK 112
           L +   +R    LYFI   G GL A  L+T  +L K+
Sbjct: 266 LQYFNDSRIHACLYFISPTGHGLKALDLVTLRELAKR 302


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,389,228
Number of Sequences: 27780
Number of extensions: 65031
Number of successful extensions: 96
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 376873630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)