Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_O07
(709 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe... 91 2e-19
SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|... 63 3e-11
SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase |S... 38 0.001
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce... 28 1.1
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy... 27 2.0
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 27 2.6
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 25 8.0
>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 310
Score = 90.6 bits (215), Expect = 2e-19
Identities = 66/189 (34%), Positives = 93/189 (49%), Gaps = 6/189 (3%)
Frame = +3
Query: 126 KFVIDNDAGGDDAMAIFLAALFEKYHAGPQLIGVTTSNGNTNEDNVSYNNQRILKVAKRQ 305
K +ID D G DDA+ LA + +L+GVTT GN + N ++L +A R
Sbjct: 2 KIIIDTDPGQDDAITALLAIASPEI----ELLGVTTVAGNVPVSMTTRNALQMLDLAGRP 57
Query: 306 DVPIYRGSKSSLVKTPEITDYFGKDGLGDSGDVYPDLVPPHTEN---AVNALIHLSKTHE 476
D+P+Y GS L++ P IT G G V P P EN AV+ +I + +E
Sbjct: 58 DIPVYAGSNKPLLRAP-ITATHVHGASGFEGAVLPP--PSRKENEGHAVDFIIDTLRNNE 114
Query: 477 -GNLTIITIGALTNLALAIKTDPTFLGRLAHVYIGAGHIHT--EEYPTAEFNAHMDVEAY 647
G +TI TIG LTN+ALA+ P + R + + AG P AEFN ++D A
Sbjct: 115 PGTITICTIGPLTNIALALNKAPEVIQRAKQIVMMAGAFSEVGNITPAAEFNIYVDPHAA 174
Query: 648 HVVTENANP 674
+V + P
Sbjct: 175 QMVLSSGIP 183
>SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 330
Score = 63.3 bits (147), Expect = 3e-11
Identities = 52/179 (29%), Positives = 87/179 (48%), Gaps = 3/179 (1%)
Frame = +3
Query: 135 IDNDAGGDDAMAIFLAALFEKYHAGPQLIGVTTSNGNTNEDNVSYNNQRILKVAKRQDVP 314
ID D G DD +A+ LAA H +++GV+T +GNT + + N ++++ QDV
Sbjct: 21 IDCDPGHDDVVALTLAAC--AGHC--KILGVSTVHGNTTLEFTTKNALAVMELL-NQDVD 75
Query: 315 IYRGSKSSLVKTPEI-TDYFGKDGLGDSGDVYPDLVPPH-TENAVNALIHLSKTHEGNLT 488
++ G+ L++ T G +GL + PD T +AV A+ + +T
Sbjct: 76 VHAGAAKPLMRESAFATHIHGTNGLAGI-SLLPDYPKKKATPDAVFAMYTTISNYPEPVT 134
Query: 489 IITIGALTNLALAIKTDPTFLGRLAH-VYIGAGHIHTEEYPTAEFNAHMDVEAYHVVTE 662
++ G LTN+AL + T P+ + +++G AEFN + D EA +V E
Sbjct: 135 LVATGPLTNIALLLATYPSVTDNIERFIFMGGSTGIGNITSQAEFNVYADPEAARLVLE 193
>SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 389
Score = 38.3 bits (85), Expect = 0.001
Identities = 45/187 (24%), Positives = 77/187 (41%), Gaps = 14/187 (7%)
Frame = +3
Query: 81 LMLSRYCECMSGIKGKFVIDNDAGGDDAMAIFLAALFEKYHAGPQLIGVTTSNGNTNEDN 260
L+ S C + K +IDND G D +F AL A Q++GVT G+ D+
Sbjct: 11 LLGSIICAYAASAASKVIIDND-GLTDLQVLF--AL----QAKQQILGVTAIYGDYTLDD 63
Query: 261 VSYNNQRILKVAK-RQDVPIYRGSKSSLVKTPEITDYFGKDGLGD---SGDVYPDLVPPH 428
+ +L +P + G+ L++T T ++ G G P+ +
Sbjct: 64 SLFLASDVLSTGNLTYCIPSFAGAAQPLLRTNN-TFQIWQELYGSYVWQGYWQPEYETAN 122
Query: 429 TEN----------AVNALIHLSKTHEGNLTIITIGALTNLALAIKTDPTFLGRLAHVYIG 578
T N A +I + K + +TI+ G +TNLA+A+ P + I
Sbjct: 123 TNNESYIYNTQISAAQFIIDMVKANPNEITIVAAGPMTNLAIALSIWPDLAKNTKSLVIM 182
Query: 579 AGHIHTE 599
G++ ++
Sbjct: 183 GGYVDSQ 189
>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 554
Score = 28.3 bits (60), Expect = 1.1
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Frame = +3
Query: 18 DNCLLTKIDMSVKLRYTLC---SILMLSRYCECMSGIKGKFVIDNDAGGDDA 164
D LL K+ KL T + C+CMS I+G F I GG A
Sbjct: 28 DEALLQKMGYKPKLHRTYAFFENFASSFAACDCMSNIRGSFYIGLLTGGPSA 79
>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 27.5 bits (58), Expect = 2.0
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = +3
Query: 267 YNNQRILKVAKRQDVPIYRGSKSSLVKTPEITDYFGKDGLGDSGDVYPDLVPPHTENAVN 446
+N Q LKV D P+Y +++ ++ + Y + L + V DL+ A+N
Sbjct: 468 HNQQASLKVMHSYDPPLYNDTRAWMIYEENLPSYLSSNFLKEEPVVLFDLL-----RALN 522
Query: 447 ALIHLSKTH--EGNLTI 491
+ + K+ EGN+ I
Sbjct: 523 DPVFVKKSFCTEGNIGI 539
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 354 EITDYFGKDGLGDSGDVYPDLVPPHTENA 440
E+ ++F DGL D G P + PP +A
Sbjct: 61 EMREFFNFDGLPDQGLNLPSIAPPSLSHA 89
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 25.4 bits (53), Expect = 8.0
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 562 HTSTSEPDTYIPKNIRRQSSMLTWT 636
H+S ++ DTY+P +R+ +L T
Sbjct: 635 HSSAAQDDTYLPSPTKRKMPLLRQT 659
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,757,535
Number of Sequences: 5004
Number of extensions: 54916
Number of successful extensions: 151
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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