Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_O03
         (407 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF014939-8|AAB63930.2|  166|Caenorhabditis elegans Hypothetical ...    27   5.2  
AC006723-2|AAF59428.1|  114|Caenorhabditis elegans Hypothetical ...    27   6.9  
AF106575-11|AAC78166.1|  329|Caenorhabditis elegans Hypothetical...    26   9.1  
AC084154-4|AAK29868.1|  767|Caenorhabditis elegans Hypothetical ...    26   9.1  

>AF014939-8|AAB63930.2|  166|Caenorhabditis elegans Hypothetical
           protein ZC132.8 protein.
          Length = 166

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 81  VSYGLWFVTNLLPTLIVLIKFFGL*FLDWFIS 176
           ++Y  WF T+L+  +I  I      FL+W IS
Sbjct: 21  LTYSWWFGTHLVCIVITAISIKNAVFLNWVIS 52


>AC006723-2|AAF59428.1|  114|Caenorhabditis elegans Hypothetical
           protein Y19D10B.3 protein.
          Length = 114

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 205 LFILNEFCAFCVSFMIFFN 261
           +F+L   CAFCV+  +FF+
Sbjct: 7   VFLLCAVCAFCVNLTVFFS 25


>AF106575-11|AAC78166.1|  329|Caenorhabditis elegans Hypothetical
           protein K04F1.7 protein.
          Length = 329

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 202 QLFILNEFCAFCVSFMIFFNLLDL 273
           Q + LN    FC   +IFFN++ L
Sbjct: 4   QFYFLNMLQIFCHQVLIFFNIISL 27


>AC084154-4|AAK29868.1|  767|Caenorhabditis elegans Hypothetical
           protein Y22D7AR.7 protein.
          Length = 767

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +3

Query: 183 VVFDLLTV-IYIK*ILCFLCKFYD 251
           V +D +T+ +Y   +L FLCKF+D
Sbjct: 33  VYYDAITINLYAVELLSFLCKFHD 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,421,455
Number of Sequences: 27780
Number of extensions: 106040
Number of successful extensions: 257
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)