Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_O01
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    29   0.86 
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    27   2.6  
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    27   3.5  
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    26   4.6  
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    26   6.1  
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|...    26   6.1  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    25   8.0  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   8.0  
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc...    25   8.0  

>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = -1

Query: 618 LQVPVMDRRLSKTMYFNKPQEYTKRSSKNRDFKEFAQQGWSKPYCSNFSRCISYDIY*WP 439
           +++P+  + LS  + F  P+     ++ N D     ++  + P  S+ S  IS D   WP
Sbjct: 206 IEIPIKPKELSNNLPF--PRLNNNNTNNNNDNNAIEKRDSASPTPSSVSSQISIDFSTWP 263

Query: 438 Y 436
           +
Sbjct: 264 H 264


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 89  NLFNWSLSYVSGYFRILLC 145
           +++NWS  Y +G + +LLC
Sbjct: 303 SVYNWSTQYTTGIYVLLLC 321


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 470 LLKLLQYGFDHPCCANSLKSLFLELLFVYSWGLLK 574
           L + +QYGF HP   + ++      +FV++W +L+
Sbjct: 162 LSQTIQYGFTHPIPQHQVRD-----MFVWNWNMLR 191


>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 92  LFNWSLSYVSGYFRILLCSETNFI*YLKCYLH 187
           LFNWS   +S Y R++  +       +KC +H
Sbjct: 309 LFNWSCQNISSYQRLVSFAHLYSYTSVKCLVH 340


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/43 (27%), Positives = 17/43 (39%)
 Frame = +2

Query: 89  NLFNWSLSYVSGYFRILLCSETNFI*YLKCYLHPAYEQLSEGR 217
           N+ NW    +  Y    LC ET    +LK Y+      +   R
Sbjct: 187 NVDNWLQDKLKHYLTTCLCRETGVQGFLKVYMQAQPNSIERAR 229


>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 45  WNVAGTYNSVYSYLV 1
           WN  GTY S+ SY++
Sbjct: 285 WNNTGTYGSILSYII 299


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +3

Query: 87  KTYLIGHYHMFRDTLGYYCVQRQILFDI*NVIYIRHTSS*VRAD 218
           +TYL    + + D L  YC +R+ LF+  N  Y     S +RAD
Sbjct: 267 RTYLRKSLNSYVDKLEVYCQKRKSLFEELNKQY--QEQSIIRAD 308


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +2

Query: 482  LQYGFDHPCCAN 517
            ++Y +D+PCCAN
Sbjct: 2405 VKYSWDYPCCAN 2416


>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 572

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 488 YGFDHPCCANSLKSLFLELLFVYSWGLLKYMV 583
           Y FD P C+NS++ +  +   +Y W    Y++
Sbjct: 126 YDFDIPNCSNSIRVIDGKAEGMYGWLATNYLL 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,784,273
Number of Sequences: 5004
Number of extensions: 55031
Number of successful extensions: 123
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)