Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_N24
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    27   1.5  
SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   1.5  
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   2.6  
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy...    26   3.4  
SPAC4G9.13c |vps26|pep8|retromer complex subunit Vps26|Schizosac...    26   4.5  
SPAP27G11.09c |||GTP cyclohydrolase |Schizosaccharomyces pombe|c...    25   7.8  

>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
            Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 7/104 (6%)
 Frame = +1

Query: 46   FAREMTSTT*PNFSKMNYKIVFVLLSVVYVLNIEAKDFVDGTKVNNLLISTEKVVVKG-- 219
            + REM  TT P   + N     ++L  + V  I   DF+D    + L+ S  ++   G  
Sbjct: 834  YIREMFETTLPEIQRTNLSNTVLILKSLGVEEISDFDFMDRPPNDTLMASLYELWTLGAL 893

Query: 220  -----YPLIKRDKDYVYVDPKLRVIKGIIARDLSRTKAEVTVTS 336
                    + +      +DP L  +  IIA D   T+  +T+ S
Sbjct: 894  DNFGKLTTLGKKMSLFPMDPSLSKLI-IIAEDYKCTEEIITIVS 936


>SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 287

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +1

Query: 250 VYVDPKLRVIKGIIARDLSRTKAEVTVTSGGVGATNVTLHLK 375
           V+  PK   +KGI++R  S     V VT+  VG T   L LK
Sbjct: 49  VFTSPKTDAVKGIVSRSSSNV-VRVNVTA-KVGRTTHVLKLK 88


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 303 IPNESRSHRDKWRCRGYQCDSSLKKRKRGGTELPNTHFWSKFLNNFNF 446
           +P+   S R+     GYQ        KRGG   PNT ++ + LNN +F
Sbjct: 177 VPSSMPSRREAGMAYGYQ------NYKRGGYT-PNTQYFEEPLNNTSF 217


>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 384

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 26/87 (29%), Positives = 38/87 (43%)
 Frame = +1

Query: 148 AKDFVDGTKVNNLLISTEKVVVKGYPLIKRDKDYVYVDPKLRVIKGIIARDLSRTKAEVT 327
           AK   D  K     ++ E+   K  PL + D    Y++    +I+     DL + KAEV 
Sbjct: 4   AKKIDDDEKQLVKPVNKEQTYKKPIPLEEDD----YIEGLSYIIQQQYFPDLPKLKAEVV 59

Query: 328 VTSGGVGATNVTLHLKSERGEGLNYLI 408
           + S  VG+ +        R E L YLI
Sbjct: 60  LESEEVGSFDAQ---NESRDEKLKYLI 83


>SPAC4G9.13c |vps26|pep8|retromer complex subunit
           Vps26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 233 FINGYPLTTTFSVEINKLFT 174
           F+NGY LT TF  ++NK F+
Sbjct: 247 FLNGYALTPTFR-DVNKKFS 265


>SPAP27G11.09c |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 326

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +1

Query: 256 VDPKLRVIKGIIARDLSRTKAEVTVTSGGVGATNVTLHLKSERGEGLNYLILIFGQ 423
           ++PK  V+    A  L + +  V      V  T + LHL     +   +L ++FGQ
Sbjct: 50  IEPKPNVVG--TAERLPKVRCVVRARIPTVKGTEIFLHLYKNDFDNKEHLAIVFGQ 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,087,264
Number of Sequences: 5004
Number of extensions: 40752
Number of successful extensions: 84
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)