Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_N22
         (416 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo...    44   1e-05
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    25   4.7  
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    25   4.7  
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe...    24   8.2  
SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual    24   8.2  

>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 44.0 bits (99), Expect = 1e-05
 Identities = 20/39 (51%), Positives = 30/39 (76%), Gaps = 2/39 (5%)
 Frame = +3

Query: 66  GARIVVHLCHAL--KKGEKGVASICNGGGGASSVMIEKM 176
           G+RI+  L + L  K  + GVA++CNGGGGASS++IE++
Sbjct: 357 GSRIICTLAYILAQKDAKIGVAAVCNGGGGASSIVIERV 395



 Score = 40.3 bits (90), Expect = 1e-04
 Identities = 14/28 (50%), Positives = 21/28 (75%)
 Frame = +2

Query: 2   DPSKINVHGGAVSLGHPIGMSWSSHCCT 85
           DP ++N++GG V++GHP+G S S   CT
Sbjct: 336 DPERVNINGGGVAMGHPLGSSGSRIICT 363


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 136 LQIEATPFSPFFKAWH 89
           L +E +P  PF+K WH
Sbjct: 285 LPLELSPGCPFYKIWH 300


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
 Frame = -1

Query: 356 KVYNLF*FHTLIH-FQIFNFNLLTIYKN--FFYLIPTL----TKKYLKQCT 225
           KV + F F  L   F +FN N+L  Y N  FF L+  L    T++++ +CT
Sbjct: 734 KVNDHFGFDLLDRVFTVFNANILAPYINHIFFLLLSRLKNSRTERFVLRCT 784


>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 580

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 287 IYKNFFYLIPTLTKKYLKQCTKKAQQ 210
           I K F Y+  T+ +KY KQ     QQ
Sbjct: 364 IEKLFLYIFKTIREKYAKQVAVVRQQ 389


>SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 180

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -1

Query: 299 NLLTIYKNFFYLIPTLTKKYLKQCTKKAQQ*LYFTFYVIDLHFFNHY 159
           N L++Y N   L  +  K YL+   ++ +   Y  FYV  L  +N Y
Sbjct: 7   NTLSVYHNLLILEASFRKTYLQLQVRRQK---YMAFYV-SLLVWNFY 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,535,963
Number of Sequences: 5004
Number of extensions: 29292
Number of successful extensions: 80
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)