Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_N22
(416 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0071 + 548255-548399,548478-548651,548787-548892,548992-54... 47 7e-06
09_02_0075 + 3916373-3916400,3916760-3916858,3916943-3917116,391... 46 2e-05
10_08_0258 + 16261454-16261540,16261636-16261712,16262734-162628... 42 2e-04
02_05_1230 - 35099942-35100018,35100138-35100221,35100367-351004... 40 6e-04
10_08_0424 - 17803984-17805270 29 1.1
01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467... 29 1.1
03_05_0560 + 25636969-25637227,25637744-25637793,25637813-25638748 29 2.0
02_03_0122 - 15491106-15491509,15492668-15492695 28 3.5
01_06_1224 - 35508842-35510404 27 6.0
01_06_0323 - 28476459-28476915,28477075-28477525,28477623-284779... 27 8.0
>01_01_0071 +
548255-548399,548478-548651,548787-548892,548992-549130,
549216-549293,549395-549460,550061-550201,550417-550527,
550614-550655,550739-550825,551033-551118,551681-551684
Length = 392
Score = 46.8 bits (106), Expect = 7e-06
Identities = 22/39 (56%), Positives = 29/39 (74%), Gaps = 2/39 (5%)
Frame = +3
Query: 60 CLGARIVVHLCHAL--KKGEKGVASICNGGGGASSVMIE 170
C GARI+V L L K G+ GVA +CNGGGGAS++++E
Sbjct: 352 CSGARIIVTLLGILRHKNGKIGVAGVCNGGGGASALVVE 390
Score = 32.7 bits (71), Expect = 0.12
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +2
Query: 11 KINVHGGAVSLGHPIGMS 64
K+N+ GG VSLGHPIG S
Sbjct: 336 KLNLSGGGVSLGHPIGCS 353
>09_02_0075 +
3916373-3916400,3916760-3916858,3916943-3917116,
3917207-3917312,3917671-3917809,3918457-3918534,
3918863-3918928,3919213-3919298,3919939-3920038,
3920245-3920355,3920457-3920498,3920671-3920757,
3921013-3921102
Length = 401
Score = 45.6 bits (103), Expect = 2e-05
Identities = 22/41 (53%), Positives = 31/41 (75%), Gaps = 2/41 (4%)
Frame = +3
Query: 54 LVCLGARIVVHLCHALKK--GEKGVASICNGGGGASSVMIE 170
L C GARI+V L L++ G+ GVA +CNGGGGAS++++E
Sbjct: 359 LGCSGARILVTLLGVLREKGGKIGVAGVCNGGGGASALVLE 399
Score = 39.1 bits (87), Expect = 0.001
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = +2
Query: 11 KINVHGGAVSLGHPIGMS 64
KINVHGGAVSLGHP+G S
Sbjct: 345 KINVHGGAVSLGHPLGCS 362
>10_08_0258 +
16261454-16261540,16261636-16261712,16262734-16262818,
16262931-16263057,16263147-16263245,16263343-16263410,
16263514-16263621,16263727-16263804,16263921-16264053,
16264138-16264234,16264465-16264588,16264668-16264776,
16264899-16264982,16265071-16265180
Length = 461
Score = 41.9 bits (94), Expect = 2e-04
Identities = 18/44 (40%), Positives = 29/44 (65%)
Frame = +2
Query: 2 DPSKINVHGGAVSLGHPIGMSWSSHCCTSVPCFKKRRKGSCFNL 133
DP+K+NV+GGA++LGHP+G + + T + K+R K F +
Sbjct: 377 DPAKVNVNGGAMALGHPLGATGARSVSTLLNEMKRRGKDCRFGV 420
>02_05_1230 -
35099942-35100018,35100138-35100221,35100367-35100475,
35100564-35100687,35101157-35101253,35101375-35101507,
35101654-35101731,35101821-35101928,35102011-35102078,
35102181-35102279,35102379-35102505,35102623-35102707,
35103297-35103373,35103482-35103562
Length = 448
Score = 40.3 bits (90), Expect = 6e-04
Identities = 18/41 (43%), Positives = 27/41 (65%)
Frame = +2
Query: 2 DPSKINVHGGAVSLGHPIGMSWSSHCCTSVPCFKKRRKGSC 124
D SK+NV+GGA++LGHP+G + + C ++ KRR C
Sbjct: 375 DRSKVNVNGGAIALGHPLGAT-GARCVATLLNEMKRRGRDC 414
>10_08_0424 - 17803984-17805270
Length = 428
Score = 29.5 bits (63), Expect = 1.1
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -2
Query: 232 SVLRRHSNDYTLHFMLSTYIFSIITD-DAPPPPLQIEATPFS 110
S+LRRH + + L FS + D D PPPP TP S
Sbjct: 3 SLLRRHRHPHPLPAAHLLRRFSALPDVDHPPPPASTPTTPAS 44
>01_06_0481 -
29646245-29646371,29646474-29646556,29646672-29646752,
29646843-29646899,29647007-29647094,29647304-29647374,
29647457-29647585,29647662-29648051,29648332-29648517,
29648612-29648692,29648787-29648879,29648966-29649086,
29649200-29649409,29649560-29649727,29649898-29650065,
29650144-29650311,29650453-29650620,29650738-29650905,
29651023-29651190,29651567-29651734,29652391-29652558,
29652645-29652812,29655720-29655887,29656069-29656236,
29656391-29656558,29656670-29656837,29657525-29657664,
29658033-29658221,29658243-29658315,29658379-29658452,
29658535-29658654,29658718-29658738,29658794-29658999,
29659094-29659271,29660066-29660126,29660232-29660341,
29660427-29660558,29661091-29661258,29661339-29661465,
29661794-29661831,29663321-29663422,29663505-29663562,
29663659-29663760,29663844-29663990,29664098-29664234,
29664313-29664462,29664561-29664720,29665820-29665878,
29666025-29666181,29666288-29666433,29666523-29666666,
29667242-29667376
Length = 2344
Score = 29.5 bits (63), Expect = 1.1
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 7 IKN*CTWWSCQFGSSNWYVLE-LALLYICAML*KKEKRELLQFVMA 141
IK T W C +SN+ L+ AL Y CA + +REL Q MA
Sbjct: 842 IKLLVTQWRCHRDNSNYLKLKRAALTYQCAWRRRVARRELRQLRMA 887
>03_05_0560 + 25636969-25637227,25637744-25637793,25637813-25638748
Length = 414
Score = 28.7 bits (61), Expect = 2.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 39 VWVIQLVCLGARIVVHLCHALKKG 110
VWV +L C G I +H+CH + G
Sbjct: 102 VWVTRLKCGGFVIGLHMCHNISDG 125
>02_03_0122 - 15491106-15491509,15492668-15492695
Length = 143
Score = 27.9 bits (59), Expect = 3.5
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 69 ARIVVHLCHALKKGEKGVASICNGG 143
AR+ VHL H +K +GVA C GG
Sbjct: 2 ARLAVHLVHLRRKPARGVA--CGGG 24
>01_06_1224 - 35508842-35510404
Length = 520
Score = 27.1 bits (57), Expect = 6.0
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -2
Query: 154 DAPPPPLQIEATPFSP 107
DAPPPP ++ P+SP
Sbjct: 13 DAPPPPPELSHPPYSP 28
>01_06_0323 -
28476459-28476915,28477075-28477525,28477623-28477904,
28478089-28478118,28480560-28481433
Length = 697
Score = 26.6 bits (56), Expect = 8.0
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 108 GEKGVASICNGGGGASSVMI 167
G G+ IC+GGGG +VM+
Sbjct: 73 GYPGLEIICDGGGGGKAVMM 92
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,743,314
Number of Sequences: 37544
Number of extensions: 196098
Number of successful extensions: 722
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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