Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_N22
         (416 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   3.2  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           20   9.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   9.7  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 7/29 (24%), Positives = 17/29 (58%)
 Frame = -1

Query: 311 IFNFNLLTIYKNFFYLIPTLTKKYLKQCT 225
           +F F++ T++ N   ++  + ++YL   T
Sbjct: 52  LFLFSVATVFGNTLVILAVVRERYLHTAT 80


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 319 IFKYLILIY*QFIKTSFILYLH 254
           +F+Y +LIY  F  +SF +  H
Sbjct: 330 VFRYGLLIYDFFKDSSFRIQHH 351


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = -2

Query: 187 LSTYIFSIITDDAPPPPLQIEATPFS 110
           L++ + + + +D P P   I   PF+
Sbjct: 658 LTSLLLTKVAEDRPLPEFYIGGNPFN 683


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,686
Number of Sequences: 438
Number of extensions: 2220
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)