Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_N21
(751 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 348 4e-97
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 198 9e-52
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 196 3e-51
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 176 3e-45
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 32 0.10
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 31 0.18
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 30 0.40
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 29 0.71
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.94
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 27 2.2
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 27 2.2
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 27 2.9
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 27 3.8
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 27 3.8
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb... 26 5.0
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 5.0
SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase |Schizosaccha... 26 5.0
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 26 6.6
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 6.6
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 25 8.7
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 25 8.7
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz... 25 8.7
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 8.7
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 348 bits (856), Expect = 4e-97
Identities = 156/228 (68%), Positives = 182/228 (79%)
Frame = +2
Query: 68 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 247
MREIVH+QAGQCGNQ+GA FW I+DEHG+D G YHG S+ Q ER+NVY+NEA+GGKYV
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60
Query: 248 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 427
PRA+LVDLEPGTMD+V+SG FG +FRPDN ++GQSGAGN WAKGHYTEGAEL D+VLDVV
Sbjct: 61 PRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVV 120
Query: 428 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVV 607
R+E+E+CD LQGFQ KIREEYPDR+M T+SV P+PK SDTVV
Sbjct: 121 RREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVV 180
Query: 608 EPYNATLSVHQLXENTDETYCIDNEALYDICFRTLKLSXPTYGDLNHL 751
EPYNATLS+HQL EN+DET+CIDNEAL I TLK+ P+Y DLNHL
Sbjct: 181 EPYNATLSMHQLVENSDETFCIDNEALSSIFANTLKIKSPSYDDLNHL 228
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 198 bits (482), Expect = 9e-52
Identities = 94/234 (40%), Positives = 137/234 (58%), Gaps = 6/234 (2%)
Frame = +2
Query: 68 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTG------AYHGDSDLQLERINVYYNEA 229
MRE++ + GQ G QIG WE+ EHGI P G H ++ + +++E
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60
Query: 230 SGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 409
GK+VPR+I VDLEP +D VR+GP+ +F P+ V G+ A NN+A+GHYT G E++D
Sbjct: 61 GQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMID 120
Query: 410 SVLDVVRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPK 589
SVL+ +R+ +++C LQGF ++ EY + +SV P+P+
Sbjct: 121 SVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAPQ 180
Query: 590 VSDTVVEPYNATLSVHQLXENTDETYCIDNEALYDICFRTLKLSXPTYGDLNHL 751
VS +VVEPYN+ L+ H +N+D T+ +DNEA YDIC R L + PTY +LN L
Sbjct: 181 VSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNLDIERPTYENLNRL 234
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 196 bits (478), Expect = 3e-51
Identities = 93/230 (40%), Positives = 134/230 (58%), Gaps = 2/230 (0%)
Frame = +2
Query: 68 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLER--INVYYNEASGGK 241
MREI+ + GQ G QIG WE+ EHGI P G + ++ Q + +++E GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 242 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 421
YVPR+I VDLEP +D VR+GP+ +F P+ + G+ A NN+A+GHYT G ELVD V D
Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTD 120
Query: 422 VVRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDT 601
+R+ +++C LQGF ++ EY + +SV P+P+VS +
Sbjct: 121 KIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTS 180
Query: 602 VVEPYNATLSVHQLXENTDETYCIDNEALYDICFRTLKLSXPTYGDLNHL 751
VVEPYN+ L+ H + D T+ +DNE+ YDIC R L + P+Y +LN L
Sbjct: 181 VVEPYNSVLTTHATLDLADCTFMVDNESCYDICRRNLDIERPSYENLNRL 230
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 176 bits (428), Expect = 3e-45
Identities = 84/230 (36%), Positives = 134/230 (58%), Gaps = 3/230 (1%)
Frame = +2
Query: 71 REIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 250
REI+ LQAGQCGNQIG++FW+ + EHGI P G + ++R +V++ ++ +Y+P
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62
Query: 251 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELVDSVLDV 424
RAIL+DLEP ++++ S +G ++ P+N + ++ GAGNNWA G Y+ + + ++D+
Sbjct: 63 RAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDM 121
Query: 425 VRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVP-SPKVSDT 601
+ +E++ D L+GF ++ + YP +I+ TYSV P S VSD
Sbjct: 122 IDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVSDV 181
Query: 602 VVEPYNATLSVHQLXENTDETYCIDNEALYDICFRTLKLSXPTYGDLNHL 751
VV+PYN+ L++ +L N D +DN AL I L PT+ N L
Sbjct: 182 VVQPYNSLLALKRLTLNADSVVVLDNAALAHIAADRLHTQNPTFHQQNQL 231
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 31.9 bits (69), Expect = 0.10
Identities = 30/96 (31%), Positives = 45/96 (46%)
Frame = +3
Query: 462 ASNLHIPSVAAPGPVWAPSSSQRSVKSTPTES*THTQ*SPRPKYQTLSSNHTMRLSQFTS 641
+S+L P + P + SS+ + T T S T T SP P T + T + +S
Sbjct: 184 SSSLSTP-ITPTVPPTSTSSTSIPIPPTSTSS-TDTNSSPLPTTSTSCTTSTSIPTGGSS 241
Query: 642 XLKTQTKPTASTTRLYTTSASALSNCPXPPTVTLTT 749
L T PT T +TS++++ P PPT T +T
Sbjct: 242 SLSTPITPTVPPT---STSSTSI---PIPPTSTSST 271
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 31.1 bits (67), Expect = 0.18
Identities = 29/105 (27%), Positives = 50/105 (47%)
Frame = +3
Query: 372 PRDTTQRVLSSLTRSSM*SAKNQNLAIAYRASNLHIPSVAAPGPVWAPSSSQRSVKSTPT 551
PR++T++ L S++ S S+ Q + +S L+ PS AP P + SSS T
Sbjct: 219 PRESTEKPLLSVSALSS-SSHLQPTSATSSSSRLY-PSRPAPTPPASSSSSPLLSSQTVK 276
Query: 552 ES*THTQ*SPRPKYQTLSSNHTMRLSQFTSXLKTQTKPTASTTRL 686
+ ++ P P + S+++ +R S L QT T+ T +
Sbjct: 277 TTTSNASRQPSPLVSSKSTDNIIR-SHSPVLLTPQTLSTSETKHI 320
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 29.9 bits (64), Expect = 0.40
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 651 TQTKPTASTTRLYTTSASALSNCPXPPTVTLTT 749
T T +T + TTS S ++CP P T+ + T
Sbjct: 166 TSTSCNPATVLIVTTSGSTSTSCPPPTTILIVT 198
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 29.1 bits (62), Expect = 0.71
Identities = 24/102 (23%), Positives = 53/102 (51%)
Frame = +3
Query: 399 SSLTRSSM*SAKNQNLAIAYRASNLHIPSVAAPGPVWAPSSSQRSVKSTPTES*THTQ*S 578
SS T ++ S+ + + + + +S+ S ++ + SSS S S+ + S + + S
Sbjct: 147 SSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 206
Query: 579 PRPKYQTLSSNHTMRLSQFTSXLKTQTKPTASTTRLYTTSAS 704
P + SS+H+ S +S + ++P++S++ + T S+S
Sbjct: 207 SVPITSSTSSSHSSS-SSSSSSSSSSSRPSSSSSFITTMSSS 247
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 28.7 bits (61), Expect = 0.94
Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Frame = +3
Query: 396 LSSLTRSSM*SAKNQNLAIAYRASNLHIPSVA--APGPVWAPSSSQRSVKSTPTES*THT 569
L+S T SS+ S+ + + S+ S A + + SSS S S+P+ S + T
Sbjct: 170 LTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSST 229
Query: 570 Q*SPRPKYQTLSSNHTMRLSQFTSXLKTQTKPTASTTRLYTTSASALSNCPXPPTVTLTT 749
S ++ S + S +S + + TAS++ ++ S+ S+ PT T +T
Sbjct: 230 LTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSST 289
Score = 28.7 bits (61), Expect = 0.94
Identities = 26/112 (23%), Positives = 56/112 (50%)
Frame = +3
Query: 381 TTQRVLSSLTRSSM*SAKNQNLAIAYRASNLHIPSVAAPGPVWAPSSSQRSVKSTPTES* 560
++Q +SS + S+ SA + + +Y +S+ + S ++P + SSS + S T S
Sbjct: 184 SSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPS---SSSSSTLTSSSLSTSSI 240
Query: 561 THTQ*SPRPKYQTLSSNHTMRLSQFTSXLKTQTKPTASTTRLYTTSASALSN 716
T S +LSS+ + + +S + ++S++ T+++S +S+
Sbjct: 241 PSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISS 292
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 371 AKGHYTEGAELVDSVLDVVRKESESCDCLQ 460
A+GH G ELV + D +RK+SE+ L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +3
Query: 195 SWSASMYTTMKPPAASTCPAPFSSTWSPAPWTLSA 299
S +AS PP A+ + SST SPAPW A
Sbjct: 396 SGAASPQAGHPPPWAAASTSVSSSTSSPAPWAKPA 430
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 27.1 bits (57), Expect = 2.9
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +2
Query: 107 NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERI 208
N++G E+++++ +DPT A + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 26.6 bits (56), Expect = 3.8
Identities = 22/78 (28%), Positives = 34/78 (43%)
Frame = +3
Query: 483 SVAAPGPVWAPSSSQRSVKSTPTES*THTQ*SPRPKYQTLSSNHTMRLSQFTSXLKTQTK 662
S A P SSS S STP S + S SS+ + S ++ KT +
Sbjct: 145 STATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSSSASSSGSISSADAKTVSA 204
Query: 663 PTASTTRLYTTSASALSN 716
+ ST ++TS ++ S+
Sbjct: 205 SSNSTISGFSTSTTSASS 222
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 302 GPFGQIFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 403
GP+G +F P F+F +G NW+ Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190
>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 444 LAIAYRASNLHIPSVAAPGPVWAPSSSQRSVK 539
LA+ Y + + +V APG +W+P+ +R K
Sbjct: 159 LAVRYGPLGIRV-NVCAPGTIWSPAWDERFKK 189
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.2 bits (55), Expect = 5.0
Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 2/99 (2%)
Frame = +3
Query: 444 LAIAYR-ASNLHIPSVAAPGPVWAPSSSQRSVKSTPTES*THTQ*SPRPKYQTLSSNHTM 620
++ AY+ + L P++ A P+SS ++ T + HT PK T +S H M
Sbjct: 663 ISFAYQHGTPLATPTMRANSFNSYPASSAEPIRRPATTTVGHTPNLYSPKTNTYNSRH-M 721
Query: 621 RLSQFTSXLKT-QTKPTASTTRLYTTSASALSNCPXPPT 734
S + P+ YT ++ L N PT
Sbjct: 722 AYEMTKSHINVISPGPSLQVNAPYTPTSGELGNKVSNPT 760
>SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 363
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 51 KITYTK*GKSFIYRPANVV 107
+I+YT G SFIYRP N++
Sbjct: 64 EISYT--GTSFIYRPGNII 80
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.8 bits (54), Expect = 6.6
Identities = 17/65 (26%), Positives = 21/65 (32%)
Frame = -3
Query: 266 RREWRGARTCRRRLHCSIH*CAPTASQSPHGRHRWGRCRARQR*SPRT*LQSGYHIGRPV 87
R R C + L C H C + ++R QS H G P
Sbjct: 693 RENVRCGELCNKLLSCKTHFCEKLCHPDGECESSCKKECGKRRMYCEHVCQSPCHAGHPC 752
Query: 86 DERFP 72
DER P
Sbjct: 753 DERIP 757
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 25.8 bits (54), Expect = 6.6
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Frame = +3
Query: 165 PVPTMGTLT----CSWSASMYTTMKPPAASTCPAPFSSTWSPAP 284
P+PT + S S T P +A+T P P S+T P P
Sbjct: 544 PIPTSADTVESKHAAGSGSATTIPSPGSATTKPTPGSATTKPTP 587
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +2
Query: 323 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDC 454
RP +F G++ G + E D ++ + + ESCDC
Sbjct: 955 RPSRLIF-YDNCGDSSGAGLCNKAYEHTDELITMAIERIESCDC 997
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 25.4 bits (53), Expect = 8.7
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
Frame = +3
Query: 462 ASNLHIPSVAAPGPVWAPSSSQRSVKSTPTES*THTQ*SPRPKYQTLSSNHTMRLSQFTS 641
A+N+H+ SVAA PS+ V +T T S R Q S R + +
Sbjct: 172 AANVHVLSVAASPNPSTPSNGPAPVSTTATPSRNPVTRLQRIFSQNSVSRQNSRTGRGAA 231
Query: 642 XLKT-QTKPTASTTRLYTTSASALSN 716
T +T T + ++S+ SN
Sbjct: 232 VANTEETNSTGGSETGGAANSSSTSN 257
>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 255
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 360 PAPDCPKTKLSGRKICPKGPERTESMVPGSKS 265
P+ PK L R I P GPE + + GS S
Sbjct: 20 PSTPPPKEVLHTRVIVPNGPEEIKLRLVGSHS 51
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +3
Query: 597 TLSSNHTMRLSQFTSXLKTQTKPTASTTRLYTTSASALSNCPXPPTVTLTT 749
T +S H++ + TS + + STT + S + PPT +L T
Sbjct: 54 TETSTHSVTSTNITSIVPPPSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNT 104
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,056,293
Number of Sequences: 5004
Number of extensions: 64171
Number of successful extensions: 239
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -