Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_N20
(442 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC4G3.15c |||CCR4-Not complex subunit Not2 |Schizosaccharomyce... 98 6e-22
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 50 2e-07
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|... 28 0.73
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 27 1.3
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos... 26 2.2
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 26 2.2
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 26 3.0
SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |... 26 3.0
SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting prot... 25 3.9
SPAC823.15 |ppa1||minor serine/threonine protein phosphatase Ppa... 25 3.9
SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe... 24 9.0
SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po... 24 9.0
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 24 9.0
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi... 24 9.0
>SPCC4G3.15c |||CCR4-Not complex subunit Not2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 176
Score = 97.9 bits (233), Expect = 6e-22
Identities = 42/87 (48%), Positives = 58/87 (66%)
Frame = +2
Query: 17 LFYLFYCFVGDVLQIAAAAELYNREWRYHMEEKVWISQAPGMPMVEKTSTYERGTYYFFD 196
LFY+FY DV+Q AAA EL NR WR+H E +VW++ PGM +++T +ERG Y FFD
Sbjct: 89 LFYIFYTMPRDVMQEAAAQELTNRNWRFHKELRVWLTPVPGMKPLQRTPQFERGYYMFFD 148
Query: 197 AHNWRKVPKEFHLDYSKLEGRPQLPPH 277
+W+++ K+F L Y+ LE R Q H
Sbjct: 149 PIHWKRIKKDFLLMYAALEDRAQSAVH 175
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 49.6 bits (113), Expect = 2e-07
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Frame = +2
Query: 8 PILLFYLFYCFVGDVLQIAAAAELYNREWRYHMEEKVWISQAPGMPMVEKTSTYERGTYY 187
P LFY+FY G Q A EL + WR+H + W + M+ T +E G+Y
Sbjct: 542 PDTLFYMFYYRPGTYQQYIAGQELKKQSWRFHKKYTTWFQRHEEPKMI--TDEFESGSYR 599
Query: 188 FFDAH-NW-RKVPKEFHLDYSKLE 253
+FD +W ++ +F Y LE
Sbjct: 600 YFDFEGDWVQRKKADFRFTYQYLE 623
>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 767
Score = 27.9 bits (59), Expect = 0.73
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 152 EKTSTYERGTYYFFDAHNWRKVPKEFHLDYSKLEGR 259
E YE Y++ HN RK+ FHL +++ R
Sbjct: 553 ELVPLYEGFQNYYYSCHNGRKLSWLFHLSKGEIKAR 588
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 27.1 bits (57), Expect = 1.3
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 24 ICSTVSLVTFYKLRLQQSYTIANGDIIWRRRCGSHK 131
I +V+L + RL Q+YT N ++ G HK
Sbjct: 298 ILLSVALFALFSSRLSQAYTFTNNALLCCHELGLHK 333
>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 849
Score = 26.2 bits (55), Expect = 2.2
Identities = 16/64 (25%), Positives = 25/64 (39%)
Frame = +2
Query: 65 AAAELYNREWRYHMEEKVWISQAPGMPMVEKTSTYERGTYYFFDAHNWRKVPKEFHLDYS 244
A+ N RY ++WI Q +P + + + D W+K F +DY
Sbjct: 2 ASTATQNASTRY---SQIWIDQPASLPFQDSINLIKE------DKEKWKKEKTAFLIDYD 52
Query: 245 KLEG 256
EG
Sbjct: 53 WFEG 56
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 26.2 bits (55), Expect = 2.2
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Frame = +3
Query: 84 IANGDIIWRRRCGSH---KRPACQWSRRLQRTN 173
+A+ D+IW R C H K C W L N
Sbjct: 143 LADDDVIWHRMCEQHINRKCEKCGWGLPLLERN 175
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 25.8 bits (54), Expect = 3.0
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +2
Query: 23 YLFYCFVGDVLQIAAAAELYNREWRY 100
+L CFV D Q A AAEL W Y
Sbjct: 1382 FLKRCFVSDPNQRATAAELLMDPWVY 1407
>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 25.8 bits (54), Expect = 3.0
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 111 RRCGSHKRPACQWSRRLQRTNAAPTTSSTRTI 206
R G HKR A + R + APTT + TI
Sbjct: 490 RESGQHKRMASLTNSREMQIQHAPTTFAAETI 521
>SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting protein
1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 209
Score = 25.4 bits (53), Expect = 3.9
Identities = 14/45 (31%), Positives = 16/45 (35%)
Frame = +3
Query: 9 RYYYSICSTVSLVTFYKLRLQQSYTIANGDIIWRRRCGSHKRPAC 143
+Y+Y CS S F R N W RC SH C
Sbjct: 148 KYWYCSCSQFSYNAFNSSRSFDEPMPKNEQETWGGRCLSHHPTIC 192
>SPAC823.15 |ppa1||minor serine/threonine protein phosphatase
Ppa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 25.4 bits (53), Expect = 3.9
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 9 RYYYSICSTVSLVTFYKLRLQQSYTIANGD 98
R Y+S+ TVSL+ +K+R Q TI G+
Sbjct: 89 RGYHSV-ETVSLLIAFKIRYPQRITILRGN 117
>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 248
Score = 24.2 bits (50), Expect = 9.0
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 14 LLFYLFYCFVGDVLQIAAAAELYN 85
L+FYL + F+G + I A YN
Sbjct: 37 LMFYLTFIFIGVIYAICKAVIEYN 60
>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 24.2 bits (50), Expect = 9.0
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 240 TASWRVGRSYRPMCSRSAST 299
T + +G+SYRP SR+ S+
Sbjct: 164 TTKFPLGKSYRPKASRTTSS 183
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 24.2 bits (50), Expect = 9.0
Identities = 9/38 (23%), Positives = 18/38 (47%)
Frame = +3
Query: 183 TTSSTRTIGERCRKSFIWITASWRVGRSYRPMCSRSAS 296
++S ++ ER ++ WI W + +Y + S S
Sbjct: 322 SSSQASSVAERATRNCSWIGRIWSIKLTYMTLSGASTS 359
>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1107
Score = 24.2 bits (50), Expect = 9.0
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +2
Query: 74 ELYNREWRYHMEEKVWISQAPGMP 145
E N W +H +W+SQA P
Sbjct: 123 ESSNNTWHFHYIVLLWLSQALNTP 146
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,565,276
Number of Sequences: 5004
Number of extensions: 31508
Number of successful extensions: 112
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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