Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_N20
(442 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0276 + 23771233-23771268,23773552-23773897,23774425-237745... 82 2e-16
03_05_1049 - 29956379-29956400,29957103-29957188,29957269-299574... 68 3e-12
03_05_0520 + 25139314-25139364,25139580-25139711,25141594-251417... 49 1e-06
03_06_0019 - 31078669-31080081 33 0.077
05_02_0067 + 6298232-6298294,6298532-6299068 31 0.54
11_01_0374 - 2843405-2843508,2844134-2844239,2844327-2844409,284... 28 3.8
03_01_0382 + 2961665-2961672,2962504-2962557,2962935-2963004,296... 27 6.7
02_05_1055 - 33798162-33798290,33798417-33798604,33798707-337987... 27 6.7
11_01_0311 + 2322511-2323527 27 8.8
09_02_0444 - 9444340-9444829,9444985-9445688 27 8.8
03_05_1050 - 29966031-29966076,29966180-29966232,29966420-299668... 27 8.8
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 27 8.8
02_05_0659 + 30679809-30680253,30680699-30680715,30682373-306825... 27 8.8
02_04_0291 + 21637700-21638164 27 8.8
01_06_1061 - 34169469-34169624,34170837-34170938,34171029-341711... 27 8.8
01_03_0133 - 12873365-12873471,12873826-12873906,12874146-12874392 27 8.8
>05_05_0276 +
23771233-23771268,23773552-23773897,23774425-23774541,
23774712-23774810,23774949-23775016,23775107-23775181,
23775386-23775931,23776040-23776092,23776163-23776204,
23776314-23776458,23776541-23776651,23777496-23777921,
23778116-23778373
Length = 773
Score = 81.8 bits (193), Expect = 2e-16
Identities = 38/87 (43%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Frame = +2
Query: 17 LFYLFYCFVGDVLQIAAAAELYNREWRYHMEEKVWISQAPGMPMVEKTSTYERGTYYFFD 196
LFY+FY D Q+ AA E+ W YH E + W+ +AP + KT+TYE+G Y FD
Sbjct: 441 LFYIFYSMPQDAAQLYAANEICKYGWVYHKELRQWVKRAPNTTPLVKTTTYEQGLCYLFD 500
Query: 197 AHNWRKVPKE-FHLDYSKLEGRPQLPP 274
A+ W +PK+ F L Y +E P LPP
Sbjct: 501 ANIWDAIPKDNFILRYDDIEKIPALPP 527
>03_05_1049 -
29956379-29956400,29957103-29957188,29957269-29957413,
29958518-29958813,29959242-29959253
Length = 186
Score = 68.1 bits (159), Expect = 3e-12
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Frame = +2
Query: 80 YNREWRYHMEEKVWISQAPGMPMVEKTSTYERGTYYFFDAHNWRKVPKE-FHLDYSKLEG 256
YNR W YH E +VW+++ P + + KT YERG+Y FD +NW + K+ F L Y ++E
Sbjct: 104 YNRGWFYHKEVRVWLTRIPNVEPLVKTPHYERGSYGCFDPNNWETIRKDNFVLHYDQIEK 163
Query: 257 RPQLP 271
+P +P
Sbjct: 164 KPAIP 168
>03_05_0520 + 25139314-25139364,25139580-25139711,25141594-25141731,
25143191-25143241,25143662-25143751,25143854-25144000,
25144108-25144218,25144307-25144375,25144777-25145517,
25145840-25146004,25146376-25146442,25146580-25146704,
25148714-25148983,25149065-25149199,25149316-25149497,
25149669-25149744
Length = 849
Score = 49.2 bits (112), Expect = 1e-06
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Frame = +2
Query: 14 LLFYLFYCFVGDVLQIAAAAELYNREWRYHMEEKVWISQAPGMPMVEKTSTYERGTYYFF 193
LLF+ FY Q +A EL + WR+H + W Q P V T YERG+Y +F
Sbjct: 755 LLFFAFYYQQNTYQQFLSARELKKQSWRFHRKYNTWF-QRHVEPQV-TTDEYERGSYVYF 812
Query: 194 DAH--------NW-RKVPKEFHLDYSKLE 253
D H W +++ +F +Y+ LE
Sbjct: 813 DFHVIDDGTGSGWCQRIKNDFTFEYNFLE 841
>03_06_0019 - 31078669-31080081
Length = 470
Score = 33.5 bits (73), Expect = 0.077
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Frame = +1
Query: 55 TNCGCSRVIQSRMAISYGGE--GVDLTSAR----HANGREDFNVRTRHLLLLRRAQLEKG 216
T R++ + S+GGE GVD+ S H + R D T LLL ++LEK
Sbjct: 41 TEVNHGRILGALDDASHGGELGGVDMVSISDGLGHGDDRSDLGRLTESLLLAMPSELEKL 100
Query: 217 AERVSFGLQQAGG 255
R++ AGG
Sbjct: 101 VGRINASASAAGG 113
>05_02_0067 + 6298232-6298294,6298532-6299068
Length = 199
Score = 30.7 bits (66), Expect = 0.54
Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = +1
Query: 61 CG-CSRVIQSRMAISYGGEGVDLTSARHANGREDFNVRTRHLLLLRRAQLEKGAERVSFG 237
CG C+ ++ RM GG GV+ H DFN TR L A + R SF
Sbjct: 105 CGLCAEAVRERMRGGGGGGGVEAALRWHMEVCRDFNSTTRLNPKLSLAGSMRDIARRSFN 164
Query: 238 LQ-QAGGSAAVT 270
+ A SAA T
Sbjct: 165 RRTTASTSAAAT 176
>11_01_0374 -
2843405-2843508,2844134-2844239,2844327-2844409,
2844886-2845078,2845527-2845662,2846185-2846264,
2846348-2846932,2847058-2847126,2847203-2847347,
2847442-2847542,2848208-2849066,2849397-2849536,
2849606-2849783,2849885-2850287,2850770-2850833,
2851223-2851278,2851470-2851572
Length = 1134
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = +1
Query: 226 VSFGLQQAGGSAAVTAPCAHVAHPRLSL 309
VS GL++A G++ +AP +H+A ++SL
Sbjct: 772 VSDGLKRAVGTSPTSAPSSHLAENQMSL 799
>03_01_0382 +
2961665-2961672,2962504-2962557,2962935-2963004,
2963141-2963386,2967246-2967491,2968837-2968888,
2969270-2969651,2970527-2970681,2971389-2971713,
2975803-2975871,2976189-2976346,2976444-2976551,
2976659-2977131
Length = 781
Score = 27.1 bits (57), Expect = 6.7
Identities = 17/55 (30%), Positives = 22/55 (40%)
Frame = +1
Query: 145 NGREDFNVRTRHLLLLRRAQLEKGAERVSFGLQQAGGSAAVTAPCAHVAHPRLSL 309
NG ED N T+ + +R E+G R G +A A A LSL
Sbjct: 115 NGPEDLNKLTKKEIDEKRGMRERGIVRTGSAADATGSAADTAATAATTTLTPLSL 169
>02_05_1055 -
33798162-33798290,33798417-33798604,33798707-33798767,
33799045-33799122,33799250-33799472,33799599-33799824,
33799922-33800116,33800210-33800627,33800904-33801182
Length = 598
Score = 27.1 bits (57), Expect = 6.7
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 56 QIAAAAELYNRE-WRYHMEEKVWISQAPGMPMVEKTSTYERGT 181
++AAA+E+ + WR +EE W S G+ + T + G+
Sbjct: 505 EVAAASEISGEKFWRMPLEESYWESMKSGVADMVNTGGRQGGS 547
>11_01_0311 + 2322511-2323527
Length = 338
Score = 26.6 bits (56), Expect = 8.8
Identities = 17/62 (27%), Positives = 27/62 (43%)
Frame = -3
Query: 275 GAVTAADPPACCNPNETLSAPFSNCAXXXXXXXXXRTLKSSRPLACRALVRSTPSPPYDI 96
GAV AD AC P+ T S C+ + S ++ RA + + P+PP +
Sbjct: 23 GAVRVADVAACTAPSST---RVSTCSSSSSTTASSSSPTLSVTVSYRATLLAAPAPPLQL 79
Query: 95 AI 90
+
Sbjct: 80 RL 81
>09_02_0444 - 9444340-9444829,9444985-9445688
Length = 397
Score = 26.6 bits (56), Expect = 8.8
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +2
Query: 59 IAAAAELYNREWRYHMEEKVWISQAPGMPMVEKTSTYERGTYYFFDAHNWR 211
I AAA WR + ++++ + G +T Y G+Y+ D N+R
Sbjct: 49 IRAAAACRRWRWRRVIGGRIFLLRFRGQHSWTRTEAYTVGSYHVADNPNYR 99
>03_05_1050 -
29966031-29966076,29966180-29966232,29966420-29966845,
29966983-29967060,29967135-29967220,29969054-29969155,
29969221-29969427,29970528-29970885,29971011-29971174,
29971258-29971366,29971595-29971600
Length = 544
Score = 26.6 bits (56), Expect = 8.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 11 ILLFYLFYCFVGDVLQIAAAAEL 79
+ LFY+FY D Q+ AA+EL
Sbjct: 522 LTLFYIFYSMPRDEAQLCAASEL 544
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 26.6 bits (56), Expect = 8.8
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Frame = +1
Query: 133 ARHANGREDFNVRT----RHLLLLRRAQLEKGAERVSFGLQQAGGSAAVTAPCAHVAHPR 300
A+HA G++ F++R H+L + + GA+R+ G++ A G T +
Sbjct: 384 AKHA-GKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPTGTCARVRIGQVL 442
Query: 301 LSLYC 315
LS+ C
Sbjct: 443 LSVRC 447
>02_05_0659 +
30679809-30680253,30680699-30680715,30682373-30682530,
30682570-30682846
Length = 298
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -3
Query: 164 LKSSRPLACRALVRSTPSP 108
+ + R LACR L RSTPSP
Sbjct: 1 MSTVRCLACRFLWRSTPSP 19
>02_04_0291 + 21637700-21638164
Length = 154
Score = 26.6 bits (56), Expect = 8.8
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 108 RRRCGSHKRPACQWSRRLQRTNAAPTTSSTRTIGER 215
RRR +H+R Q +R R A T ST +G+R
Sbjct: 65 RRRRRAHRRRRRQARQRRWRQARATTADSTAAVGDR 100
>01_06_1061 -
34169469-34169624,34170837-34170938,34171029-34171180,
34172087-34172153,34172239-34172419,34172655-34172778,
34174775-34174871,34175929-34176331,34176729-34176888,
34177412-34177486,34177714-34177892,34178224-34178303,
34178561-34179322
Length = 845
Score = 26.6 bits (56), Expect = 8.8
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Frame = +3
Query: 105 WRRRCGSHKRPACQWSRRLQRTNAA-PTTSSTRTIGER--CRKSFIWITASWRVGRSYRP 275
W R G+ R + +R++ A P + R++ + C F WIT W G +
Sbjct: 155 WGRVLGAAARKEWEAELAARRSSGALPRPARRRSLADSLACAWPFSWITCRWLKGNAVAA 214
Query: 276 MCSRSASTPL 305
+ + +PL
Sbjct: 215 EPAAATPSPL 224
>01_03_0133 - 12873365-12873471,12873826-12873906,12874146-12874392
Length = 144
Score = 26.6 bits (56), Expect = 8.8
Identities = 7/23 (30%), Positives = 16/23 (69%)
Frame = +2
Query: 83 NREWRYHMEEKVWISQAPGMPMV 151
+R+WR+ ++E+ W+ G+P +
Sbjct: 6 SRQWRFTLDEQRWLDFFKGLPCI 28
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,141,307
Number of Sequences: 37544
Number of extensions: 236827
Number of successful extensions: 774
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -