Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_N20
(442 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BX641116-1|CAE46054.1| 191|Homo sapiens hypothetical protein pr... 141 8e-34
BC011826-1|AAH11826.1| 540|Homo sapiens CCR4-NOT transcription ... 141 8e-34
BC002597-1|AAH02597.1| 540|Homo sapiens CCR4-NOT transcription ... 141 8e-34
AK000662-1|BAA91313.1| 490|Homo sapiens protein ( Homo sapiens ... 141 8e-34
AF180473-1|AAF29827.1| 540|Homo sapiens Not2p protein. 141 8e-34
BC016474-1|AAH16474.1| 753|Homo sapiens CCR4-NOT transcription ... 55 9e-08
AB014591-1|BAA31666.2| 762|Homo sapiens KIAA0691 protein protein. 55 9e-08
AL137674-1|CAB70869.1| 185|Homo sapiens hypothetical protein pr... 36 0.082
>BX641116-1|CAE46054.1| 191|Homo sapiens hypothetical protein
protein.
Length = 191
Score = 141 bits (342), Expect = 8e-34
Identities = 61/86 (70%), Positives = 70/86 (81%)
Frame = +2
Query: 14 LLFYLFYCFVGDVLQIAAAAELYNREWRYHMEEKVWISQAPGMPMVEKTSTYERGTYYFF 193
LLFYL+Y GDVLQ+ AA EL+NR+WRYH EE+VWI++APGM KT+TYERGTYYFF
Sbjct: 94 LLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYFF 153
Query: 194 DAHNWRKVPKEFHLDYSKLEGRPQLP 271
D NWRKV KEFHL+Y KLE RP LP
Sbjct: 154 DCLNWRKVAKEFHLEYDKLEERPHLP 179
>BC011826-1|AAH11826.1| 540|Homo sapiens CCR4-NOT transcription
complex, subunit 2 protein.
Length = 540
Score = 141 bits (342), Expect = 8e-34
Identities = 61/86 (70%), Positives = 70/86 (81%)
Frame = +2
Query: 14 LLFYLFYCFVGDVLQIAAAAELYNREWRYHMEEKVWISQAPGMPMVEKTSTYERGTYYFF 193
LLFYL+Y GDVLQ+ AA EL+NR+WRYH EE+VWI++APGM KT+TYERGTYYFF
Sbjct: 443 LLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYFF 502
Query: 194 DAHNWRKVPKEFHLDYSKLEGRPQLP 271
D NWRKV KEFHL+Y KLE RP LP
Sbjct: 503 DCLNWRKVAKEFHLEYDKLEERPHLP 528
>BC002597-1|AAH02597.1| 540|Homo sapiens CCR4-NOT transcription
complex, subunit 2 protein.
Length = 540
Score = 141 bits (342), Expect = 8e-34
Identities = 61/86 (70%), Positives = 70/86 (81%)
Frame = +2
Query: 14 LLFYLFYCFVGDVLQIAAAAELYNREWRYHMEEKVWISQAPGMPMVEKTSTYERGTYYFF 193
LLFYL+Y GDVLQ+ AA EL+NR+WRYH EE+VWI++APGM KT+TYERGTYYFF
Sbjct: 443 LLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYFF 502
Query: 194 DAHNWRKVPKEFHLDYSKLEGRPQLP 271
D NWRKV KEFHL+Y KLE RP LP
Sbjct: 503 DCLNWRKVAKEFHLEYDKLEERPHLP 528
>AK000662-1|BAA91313.1| 490|Homo sapiens protein ( Homo sapiens
cDNA FLJ20655 fis, clone KAT01590. ).
Length = 490
Score = 141 bits (342), Expect = 8e-34
Identities = 61/86 (70%), Positives = 70/86 (81%)
Frame = +2
Query: 14 LLFYLFYCFVGDVLQIAAAAELYNREWRYHMEEKVWISQAPGMPMVEKTSTYERGTYYFF 193
LLFYL+Y GDVLQ+ AA EL+NR+WRYH EE+VWI++APGM KT+TYERGTYYFF
Sbjct: 393 LLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYFF 452
Query: 194 DAHNWRKVPKEFHLDYSKLEGRPQLP 271
D NWRKV KEFHL+Y KLE RP LP
Sbjct: 453 DCLNWRKVAKEFHLEYDKLEERPHLP 478
>AF180473-1|AAF29827.1| 540|Homo sapiens Not2p protein.
Length = 540
Score = 141 bits (342), Expect = 8e-34
Identities = 61/86 (70%), Positives = 70/86 (81%)
Frame = +2
Query: 14 LLFYLFYCFVGDVLQIAAAAELYNREWRYHMEEKVWISQAPGMPMVEKTSTYERGTYYFF 193
LLFYL+Y GDVLQ+ AA EL+NR+WRYH EE+VWI++APGM KT+TYERGTYYFF
Sbjct: 443 LLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYFF 502
Query: 194 DAHNWRKVPKEFHLDYSKLEGRPQLP 271
D NWRKV KEFHL+Y KLE RP LP
Sbjct: 503 DCLNWRKVAKEFHLEYDKLEERPHLP 528
>BC016474-1|AAH16474.1| 753|Homo sapiens CCR4-NOT transcription
complex, subunit 3 protein.
Length = 753
Score = 55.2 bits (127), Expect = 9e-08
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = +2
Query: 17 LFYLFYCFVGDVLQIAAAAELYNREWRYHMEEKVWISQAPGMPMVEKTSTYERGTYYFFD 196
LF++FY G Q AA L + WR+H + +W + + T +E+GTY +FD
Sbjct: 671 LFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTI--TDEFEQGTYIYFD 728
Query: 197 AHNWRKVPKE-FHLDYSKLEGR 259
W + KE F +Y LE R
Sbjct: 729 YEKWGQRKKEGFTFEYRYLEDR 750
>AB014591-1|BAA31666.2| 762|Homo sapiens KIAA0691 protein protein.
Length = 762
Score = 55.2 bits (127), Expect = 9e-08
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = +2
Query: 17 LFYLFYCFVGDVLQIAAAAELYNREWRYHMEEKVWISQAPGMPMVEKTSTYERGTYYFFD 196
LF++FY G Q AA L + WR+H + +W + + T +E+GTY +FD
Sbjct: 680 LFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTI--TDEFEQGTYIYFD 737
Query: 197 AHNWRKVPKE-FHLDYSKLEGR 259
W + KE F +Y LE R
Sbjct: 738 YEKWGQRKKEGFTFEYRYLEDR 759
>AL137674-1|CAB70869.1| 185|Homo sapiens hypothetical protein
protein.
Length = 185
Score = 35.5 bits (78), Expect = 0.082
Identities = 16/23 (69%), Positives = 18/23 (78%)
Frame = +2
Query: 14 LLFYLFYCFVGDVLQIAAAAELY 82
LLFYL+Y GDVLQ+ AA ELY
Sbjct: 153 LLFYLYYMNGGDVLQLLAAVELY 175
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,152,453
Number of Sequences: 237096
Number of extensions: 1288493
Number of successful extensions: 4225
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4223
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3602345922
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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