Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_N20
(442 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39848-6|AAL11100.1| 317|Caenorhabditis elegans Not-like (yeast... 103 8e-23
U39848-5|AAL11099.1| 367|Caenorhabditis elegans Not-like (yeast... 103 8e-23
U39848-4|AAA80691.1| 444|Caenorhabditis elegans Not-like (yeast... 103 8e-23
Z92826-9|CAD90172.1| 701|Caenorhabditis elegans Hypothetical pr... 56 9e-09
Z92826-5|CAB07318.1| 198|Caenorhabditis elegans Hypothetical pr... 56 9e-09
AL132860-33|CAB60507.2| 701|Caenorhabditis elegans Hypothetical... 56 9e-09
U41993-8|AAA83449.1| 497|Caenorhabditis elegans Temporarily ass... 48 3e-06
U41993-7|AAA83450.2| 733|Caenorhabditis elegans Temporarily ass... 48 3e-06
AF101318-5|AAC69347.1| 574|Caenorhabditis elegans Hypothetical ... 29 1.1
L23651-7|AAM22042.1| 926|Caenorhabditis elegans Associated with... 29 2.0
L23651-6|AAK84496.3| 960|Caenorhabditis elegans Associated with... 29 2.0
U13071-2|AAL65793.1| 988|Caenorhabditis elegans Hypothetical pr... 27 8.0
>U39848-6|AAL11100.1| 317|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 2, isoform c protein.
Length = 317
Score = 103 bits (246), Expect = 8e-23
Identities = 43/89 (48%), Positives = 61/89 (68%)
Frame = +2
Query: 14 LLFYLFYCFVGDVLQIAAAAELYNREWRYHMEEKVWISQAPGMPMVEKTSTYERGTYYFF 193
+LFYLFY ++ Q+AAA ELY REWR+H E+VW++++ + E+T YE+G Y F
Sbjct: 145 VLFYLFYNCPNEIYQVAAACELYAREWRFHKSEQVWLTRSQYGGVKEQTGNYEKGHYNVF 204
Query: 194 DAHNWRKVPKEFHLDYSKLEGRPQLPPHV 280
D WRK+PKE L+Y +LE RP++P V
Sbjct: 205 DQMQWRKIPKELKLEYKELEDRPKMPQSV 233
>U39848-5|AAL11099.1| 367|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 2, isoform b protein.
Length = 367
Score = 103 bits (246), Expect = 8e-23
Identities = 43/89 (48%), Positives = 61/89 (68%)
Frame = +2
Query: 14 LLFYLFYCFVGDVLQIAAAAELYNREWRYHMEEKVWISQAPGMPMVEKTSTYERGTYYFF 193
+LFYLFY ++ Q+AAA ELY REWR+H E+VW++++ + E+T YE+G Y F
Sbjct: 195 VLFYLFYNCPNEIYQVAAACELYAREWRFHKSEQVWLTRSQYGGVKEQTGNYEKGHYNVF 254
Query: 194 DAHNWRKVPKEFHLDYSKLEGRPQLPPHV 280
D WRK+PKE L+Y +LE RP++P V
Sbjct: 255 DQMQWRKIPKELKLEYKELEDRPKMPQSV 283
>U39848-4|AAA80691.1| 444|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 2, isoform a protein.
Length = 444
Score = 103 bits (246), Expect = 8e-23
Identities = 43/89 (48%), Positives = 61/89 (68%)
Frame = +2
Query: 14 LLFYLFYCFVGDVLQIAAAAELYNREWRYHMEEKVWISQAPGMPMVEKTSTYERGTYYFF 193
+LFYLFY ++ Q+AAA ELY REWR+H E+VW++++ + E+T YE+G Y F
Sbjct: 272 VLFYLFYNCPNEIYQVAAACELYAREWRFHKSEQVWLTRSQYGGVKEQTGNYEKGHYNVF 331
Query: 194 DAHNWRKVPKEFHLDYSKLEGRPQLPPHV 280
D WRK+PKE L+Y +LE RP++P V
Sbjct: 332 DQMQWRKIPKELKLEYKELEDRPKMPQSV 360
>Z92826-9|CAD90172.1| 701|Caenorhabditis elegans Hypothetical
protein Y56A3A.1a protein.
Length = 701
Score = 56.4 bits (130), Expect = 9e-09
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Frame = +2
Query: 8 PILLFYLFYCFVGDVLQIAAAAELYNREWRYHMEEKVWISQAPGMPMVEKTSTYERGTYY 187
P LF++FY G Q+ AA L WR+H + W + + T YE+GTY
Sbjct: 616 PDTLFFIFYYMEGTRAQLLAAKALKKLSWRFHTKYLTWFQRHEEPKQI--TDDYEQGTYV 673
Query: 188 FFDAHNWRKVPKE-FHLDYSKLEGR 259
+FD W + KE F +Y LE +
Sbjct: 674 YFDFEKWSQRKKESFTFEYKFLEDK 698
>Z92826-5|CAB07318.1| 198|Caenorhabditis elegans Hypothetical
protein Y56A3A.1b protein.
Length = 198
Score = 56.4 bits (130), Expect = 9e-09
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Frame = +2
Query: 8 PILLFYLFYCFVGDVLQIAAAAELYNREWRYHMEEKVWISQAPGMPMVEKTSTYERGTYY 187
P LF++FY G Q+ AA L WR+H + W + + T YE+GTY
Sbjct: 113 PDTLFFIFYYMEGTRAQLLAAKALKKLSWRFHTKYLTWFQRHEEPKQI--TDDYEQGTYV 170
Query: 188 FFDAHNWRKVPKE-FHLDYSKLEGR 259
+FD W + KE F +Y LE +
Sbjct: 171 YFDFEKWSQRKKESFTFEYKFLEDK 195
>AL132860-33|CAB60507.2| 701|Caenorhabditis elegans Hypothetical
protein Y56A3A.1a protein.
Length = 701
Score = 56.4 bits (130), Expect = 9e-09
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Frame = +2
Query: 8 PILLFYLFYCFVGDVLQIAAAAELYNREWRYHMEEKVWISQAPGMPMVEKTSTYERGTYY 187
P LF++FY G Q+ AA L WR+H + W + + T YE+GTY
Sbjct: 616 PDTLFFIFYYMEGTRAQLLAAKALKKLSWRFHTKYLTWFQRHEEPKQI--TDDYEQGTYV 673
Query: 188 FFDAHNWRKVPKE-FHLDYSKLEGR 259
+FD W + KE F +Y LE +
Sbjct: 674 YFDFEKWSQRKKESFTFEYKFLEDK 698
>U41993-8|AAA83449.1| 497|Caenorhabditis elegans Temporarily
assigned gene nameprotein 153, isoform a protein.
Length = 497
Score = 48.0 bits (109), Expect = 3e-06
Identities = 20/43 (46%), Positives = 29/43 (67%)
Frame = +2
Query: 17 LFYLFYCFVGDVLQIAAAAELYNREWRYHMEEKVWISQAPGMP 145
LFY+FY ++ Q+ AA EL R WRY+M+EK+W+ + G P
Sbjct: 254 LFYIFYNLPKELWQLNAARELQYRGWRYNMKEKLWVHKKLGEP 296
>U41993-7|AAA83450.2| 733|Caenorhabditis elegans Temporarily
assigned gene nameprotein 153, isoform b protein.
Length = 733
Score = 48.0 bits (109), Expect = 3e-06
Identities = 20/43 (46%), Positives = 29/43 (67%)
Frame = +2
Query: 17 LFYLFYCFVGDVLQIAAAAELYNREWRYHMEEKVWISQAPGMP 145
LFY+FY ++ Q+ AA EL R WRY+M+EK+W+ + G P
Sbjct: 490 LFYIFYNLPKELWQLNAARELQYRGWRYNMKEKLWVHKKLGEP 532
>AF101318-5|AAC69347.1| 574|Caenorhabditis elegans Hypothetical
protein Y73C8C.7 protein.
Length = 574
Score = 29.5 bits (63), Expect = 1.1
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -3
Query: 167 TLKSSRPLACRALVRSTPSPPYDIAIRDCITLLQ 66
T K PL C L++ TP PP ++ +C+ L+
Sbjct: 492 TFKEKAPLICAQLLK-TPEPPNELDDNECLVCLE 524
>L23651-7|AAM22042.1| 926|Caenorhabditis elegans Associated with
ran (nuclear import/export) function protein 2, isoform
b protein.
Length = 926
Score = 28.7 bits (61), Expect = 2.0
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +1
Query: 91 MAISYGGEGVDLTSARHANGREDFNVRTRHLLLLRRAQLEKGAERVS 231
++++ G+ D ARH G DF R LL + E+GAE S
Sbjct: 313 ISVNMFGKDFDSAKARHGKGNIDFGRRGDDELLSSDEEEEQGAEDAS 359
>L23651-6|AAK84496.3| 960|Caenorhabditis elegans Associated with
ran (nuclear import/export) function protein 2, isoform
a protein.
Length = 960
Score = 28.7 bits (61), Expect = 2.0
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +1
Query: 91 MAISYGGEGVDLTSARHANGREDFNVRTRHLLLLRRAQLEKGAERVS 231
++++ G+ D ARH G DF R LL + E+GAE S
Sbjct: 350 ISVNMFGKDFDSAKARHGKGNIDFGRRGDDELLSSDEEEEQGAEDAS 396
>U13071-2|AAL65793.1| 988|Caenorhabditis elegans Hypothetical
protein T22F7.3 protein.
Length = 988
Score = 26.6 bits (56), Expect = 8.0
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = +3
Query: 9 RYYYSICSTVSLVTFYKLRLQQSYTIANGDIIWRRRC-GSHKRPACQWSRRLQRTNAAPT 185
RY+Y+ +T S F Q + N + +++C G H P CQ R + N
Sbjct: 462 RYWYN-AATRSCEMFQYTGCQGNDNNFNTLMACQQKCRGIHVEPKCQHGRAFRDRNGNFQ 520
Query: 186 TSSTRTIGERCRKSFI 233
S + G +C +++
Sbjct: 521 QCSDKQNGPKCPVNYV 536
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,925,201
Number of Sequences: 27780
Number of extensions: 184270
Number of successful extensions: 505
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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