Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_N19
(814 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0479 + 3606663-3607448 103 2e-22
01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297 44 1e-04
06_03_1120 - 27765613-27765963 37 0.022
03_04_0043 + 16747103-16747137,16747237-16747259,16748735-167488... 35 0.067
08_01_0328 + 2959014-2959055,2959336-2959398,2960871-2960949,296... 33 0.20
07_03_1222 - 24983294-24983356,24983695-24983858,24985209-249852... 33 0.27
02_01_0209 - 1399613-1399622,1399719-1399764,1399849-1399927,140... 33 0.27
05_04_0169 - 18694418-18694453,18694516-18694627,18696095-186962... 31 1.1
05_07_0342 + 29402867-29402906,29403012-29403052,29403146-294032... 30 1.9
05_03_0462 - 14316486-14316602,14316689-14316793,14318406-143184... 30 1.9
01_07_0305 - 42631214-42631330,42631423-42631527,42633208-426332... 30 2.5
03_02_0763 - 10977793-10978092,10978896-10978996,10979580-109796... 29 3.3
08_01_0356 + 3131214-3132443,3132584-3132778,3132892-3132972,313... 28 7.7
>07_01_0479 + 3606663-3607448
Length = 261
Score = 103 bits (246), Expect = 2e-22
Identities = 48/84 (57%), Positives = 64/84 (76%), Gaps = 2/84 (2%)
Frame = +3
Query: 114 MXXGKNNKLQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKI-KSKNSK-T 287
M K +K+ Q +NY +RV +Q R +G F AFD+HMNL+LGDCEEFRK+ SK+SK T
Sbjct: 1 MSNPKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSKSSKTT 60
Query: 288 ADREEKRTLGFVLLRGENIVSLTI 359
+REE+RTLG +LLRGE +VS+T+
Sbjct: 61 GEREERRTLGLLLLRGEEVVSMTV 84
>01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297
Length = 104
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Frame = +3
Query: 162 VRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD---REEKRTLGFVLLR 332
+ V L+ R G A+D+H+N+ILGD EE + +T + R KRT+ F+ +R
Sbjct: 31 IYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTKRTIPFLFVR 90
Query: 333 GENIV 347
G+ ++
Sbjct: 91 GDGVI 95
>06_03_1120 - 27765613-27765963
Length = 116
Score = 36.7 bits (81), Expect = 0.022
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Frame = +3
Query: 135 KLQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFR---KIKSKNSKTADREEK 305
KL++ + + V + R F+G F DK N++L D E+R + +S +S ++ E+
Sbjct: 24 KLRKMLFRRMLVGVNDGRYFLGLFHCVDKQGNILLQDAVEYRTSARRRSPSSPSSSPAEQ 83
Query: 306 RTLGFVLL 329
R LG +L+
Sbjct: 84 RGLGLILI 91
>03_04_0043 +
16747103-16747137,16747237-16747259,16748735-16748856,
16748980-16749042
Length = 80
Score = 35.1 bits (77), Expect = 0.067
Identities = 18/77 (23%), Positives = 42/77 (54%)
Frame = +3
Query: 123 GKNNKLQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREE 302
G+ L+++++ +++ L +R +GT + FD+ MNL++ N+ + +
Sbjct: 5 GQPPDLKKYMDKKLQIKLNANRVIVGTLRGFDQFMNLVV-----------DNTVEVNGND 53
Query: 303 KRTLGFVLLRGENIVSL 353
K +G V++RG ++V +
Sbjct: 54 KTDIGMVVVRGNSVVMI 70
>08_01_0328 +
2959014-2959055,2959336-2959398,2960871-2960949,
2961038-2961083,2961566-2961671
Length = 111
Score = 33.5 bits (73), Expect = 0.20
Identities = 19/49 (38%), Positives = 30/49 (61%)
Frame = +3
Query: 198 GTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENI 344
G FD++MNL+L D EE N K ++ +++LG +LL+G+NI
Sbjct: 32 GRIIGFDEYMNLVLDDAEEI------NVK---KDTRKSLGRILLKGDNI 71
>07_03_1222 -
24983294-24983356,24983695-24983858,24985209-24985231,
24985340-24985374
Length = 94
Score = 33.1 bits (72), Expect = 0.27
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +3
Query: 168 VILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIV 347
V L +R IGT + FD+ MNL++ N+ + EK +G V++RG ++V
Sbjct: 34 VKLNANRVVIGTLRGFDQFMNLVV-----------DNTVEVNGNEKNDIGMVVIRGNSVV 82
Query: 348 SL 353
+
Sbjct: 83 MI 84
>02_01_0209 -
1399613-1399622,1399719-1399764,1399849-1399927,
1400004-1400162,1400988-1401050,1401154-1401222
Length = 141
Score = 33.1 bits (72), Expect = 0.27
Identities = 18/46 (39%), Positives = 30/46 (65%)
Frame = +3
Query: 207 KAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENI 344
K FD++MNL+L + EE IK ++ +++LG +LL+G+NI
Sbjct: 97 KGFDEYMNLVLDEAEEI-NIK--------KDTRKSLGRILLKGDNI 133
>05_04_0169 -
18694418-18694453,18694516-18694627,18696095-18696243,
18696980-18697033,18697110-18697222,18697323-18697374
Length = 171
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +3
Query: 150 INYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLL 329
I + VI++ + +GT FD ++N++L D E+ TA+ L +LL
Sbjct: 88 IGSKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTEY-------EYTAEGRRITKLDQILL 140
Query: 330 RGENI 344
G NI
Sbjct: 141 NGNNI 145
>05_07_0342 +
29402867-29402906,29403012-29403052,29403146-29403220,
29403523-29403648,29404195-29404247,29404385-29404475
Length = 141
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 138 LQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEE 254
L+ ++ + VI R +GT + FD+ N+IL + E
Sbjct: 8 LESLVDQIISVITNDGRNIVGTLRGFDQATNIILDESHE 46
>05_03_0462 -
14316486-14316602,14316689-14316793,14318406-14318486,
14318593-14318610
Length = 106
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Frame = +3
Query: 153 NYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEF----RKIKSKNSKTADREEKRTLGF 320
N V + + ++ +G +AFD+H N++L + E K K + R +
Sbjct: 31 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISK 90
Query: 321 VLLRGENIV 347
+ LRG++++
Sbjct: 91 MFLRGDSVI 99
>01_07_0305 -
42631214-42631330,42631423-42631527,42633208-42633216,
42635198-42636142,42636349-42636450,42637210-42637302
Length = 456
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = +3
Query: 162 VRVILQXSRTFIGTFKAFDKHMNLILGDCEEF----RKIKSKNSKTADREEKRTLGFVLL 329
V + Q ++ +G +AFD H N++L + E K K + R + + L
Sbjct: 384 VLINCQNNKKLLGRVRAFDSHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFL 443
Query: 330 RGENIV 347
RG++++
Sbjct: 444 RGDSVI 449
>03_02_0763 -
10977793-10978092,10978896-10978996,10979580-10979648,
10979787-10979857,10979946-10980100,10980348-10980477,
10980946-10981013,10981335-10981592
Length = 383
Score = 29.5 bits (63), Expect = 3.3
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 539 SWSTFCSSSNARRPHDGWPSSRNDGSSSWHGSWW 640
SW+ C + P + +++ND WHG+WW
Sbjct: 213 SWNPHCRYLDGIGPKENNSNAQND----WHGAWW 242
>08_01_0356 +
3131214-3132443,3132584-3132778,3132892-3132972,
3133324-3133383,3133466-3133560,3133660-3133816,
3133896-3134021,3134398-3134478,3134557-3134647,
3134735-3134868,3135068-3135136,3135219-3135308,
3135405-3135508,3135594-3135762,3136066-3136134
Length = 916
Score = 28.3 bits (60), Expect = 7.7
Identities = 21/86 (24%), Positives = 37/86 (43%)
Frame = +3
Query: 87 SSLPXHSDKMXXGKNNKLQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKI 266
S+L SDK K+ KL+ H++ + T+ F++ DK I K+
Sbjct: 588 SALKGQSDKEKYEKSRKLKHHVH-------KIRDTYTKDFRSKDKTKKQIAVATYLIDKL 640
Query: 267 KSKNSKTADREEKRTLGFVLLRGENI 344
+ D +E T+G L+ +N+
Sbjct: 641 ALRAGNEKDEDEAETVGCCTLKVDNV 666
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,126,016
Number of Sequences: 37544
Number of extensions: 261825
Number of successful extensions: 793
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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