Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_N19
(814 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein. 133 8e-31
X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein. 133 8e-31
X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gen... 133 8e-31
J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein. 133 8e-31
CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein. 133 8e-31
BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear ribonucle... 133 8e-31
BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein. 133 8e-31
AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear ribonucle... 133 8e-31
AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear ribonucle... 133 8e-31
AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear ribonucle... 131 3e-30
X15892-1|CAA33901.1| 240|Homo sapiens protein ( Human hcerN3 ge... 130 8e-30
U41303-1|AAA98969.1| 240|Homo sapiens small nuclear ribonuleopr... 130 8e-30
J04615-1|AAA36617.1| 240|Homo sapiens protein ( Human lupus aut... 130 8e-30
CR450350-1|CAG29346.1| 240|Homo sapiens SNRPN protein. 130 8e-30
BC025178-1|AAH25178.1| 240|Homo sapiens small nuclear ribonucle... 130 8e-30
BC024777-1|AAH24777.1| 240|Homo sapiens SNURF protein protein. 130 8e-30
BC003180-1|AAH03180.1| 240|Homo sapiens small nuclear ribonucle... 130 8e-30
BC000611-1|AAH00611.1| 240|Homo sapiens SNRPN protein protein. 130 8e-30
AF400432-1|AAK92481.1| 240|Homo sapiens small nuclear ribonucle... 130 8e-30
AK222633-1|BAD96353.1| 240|Homo sapiens small nuclear ribonucle... 128 2e-29
AF134825-2|AAD54488.1| 234|Homo sapiens small nuclear ribonucle... 128 3e-29
AF134825-1|AAD54489.1| 243|Homo sapiens small nuclear ribonucle... 128 3e-29
M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small nuc... 126 1e-28
M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small nuc... 126 1e-28
X16163-1|CAA34288.1| 218|Homo sapiens SmB /B' autoimmune antige... 104 3e-22
BC065369-1|AAH65369.1| 208|Homo sapiens Unknown (protein for MG... 85 2e-16
AL513477-10|CAI22612.3| 208|Homo sapiens small nuclear ribonucl... 85 2e-16
BC059944-1|AAH59944.1| 125|Homo sapiens LSMD1 protein protein. 46 1e-04
BC051846-1|AAH51846.1| 125|Homo sapiens LSMD1 protein protein. 46 1e-04
BC033861-1|AAH33861.1| 173|Homo sapiens LSM domain containing 1... 46 1e-04
BC006407-1|AAH06407.1| 125|Homo sapiens LSMD1 protein protein. 46 1e-04
AF530060-1|AAQ09944.1| 125|Homo sapiens phosphonoformate immuno... 46 1e-04
BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein. 42 0.002
BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small ... 42 0.002
BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small ... 42 0.002
AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated Sm-... 42 0.002
AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1 prot... 42 0.002
BC018621-1|AAH18621.1| 103|Homo sapiens LSM7 homolog, U6 small ... 40 0.011
AF182293-1|AAD56231.1| 103|Homo sapiens U6 snRNA-associated Sm-... 40 0.011
AC005258-2|AAG45442.1| 103|Homo sapiens U6 snRNA-associated Sm-... 40 0.011
CR457185-1|CAG33466.1| 102|Homo sapiens LSM3 protein. 37 0.075
BC007055-1|AAH07055.1| 102|Homo sapiens LSM3 homolog, U6 small ... 37 0.075
AJ238095-1|CAB45866.1| 102|Homo sapiens Lsm3 protein protein. 37 0.075
AF182418-1|AAG14954.1| 102|Homo sapiens MDS017 protein. 37 0.075
AF182289-1|AAD56227.1| 102|Homo sapiens U6 snRNA-associated Sm-... 37 0.075
X12466-1|CAA31007.1| 92|Homo sapiens protein ( Human mRNA for ... 37 0.100
M37716-1|AAA90926.1| 92|Homo sapiens small nuclear RNA protein... 37 0.100
M21258-1|AAB59365.1| 92|Homo sapiens protein ( Human small nuc... 37 0.100
M15919-1|AAA36621.1| 81|Homo sapiens protein ( Human autoimmun... 37 0.100
BC090951-1|AAH90951.1| 92|Homo sapiens small nuclear ribonucle... 37 0.100
BC002639-1|AAH02639.1| 92|Homo sapiens small nuclear ribonucle... 37 0.100
AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear ribonucle... 37 0.100
X58233-1|CAA41191.1| 50|Homo sapiens 36/8-3 fusion protein wit... 33 0.93
U15008-1|AAC13776.1| 118|Homo sapiens Sm D2 protein. 33 1.2
BC001930-1|AAH01930.1| 118|Homo sapiens small nuclear ribonucle... 33 1.2
BC000486-1|AAH00486.1| 118|Homo sapiens small nuclear ribonucle... 33 1.2
AC007191-2|AAD22673.1| 118|Homo sapiens SMD2_HUMAN protein. 33 1.2
BC005938-1|AAH05938.1| 91|Homo sapiens LSM5 homolog, U6 small ... 31 3.7
AJ238097-1|CAB45868.1| 91|Homo sapiens Lsm5 protein protein. 31 3.7
AF182291-1|AAD56229.1| 91|Homo sapiens U6 snRNA-associated Sm-... 31 3.7
X85373-1|CAA59689.1| 76|Homo sapiens Sm protein G protein. 31 6.5
CR456918-1|CAG33199.1| 76|Homo sapiens SNRPG protein. 31 6.5
BC106055-1|AAI06056.1| 76|Homo sapiens small nuclear ribonucle... 31 6.5
BC071880-1|AAH71880.1| 76|Homo sapiens small nuclear ribonucle... 31 6.5
BC070166-1|AAH70166.1| 76|Homo sapiens small nuclear ribonucle... 31 6.5
BC066302-1|AAH66302.1| 76|Homo sapiens small nuclear ribonucle... 31 6.5
BC022432-1|AAH22432.1| 76|Homo sapiens small nuclear ribonucle... 31 6.5
BC000070-1|AAH00070.1| 76|Homo sapiens small nuclear ribonucle... 31 6.5
AK128140-1|BAC87294.1| 280|Homo sapiens protein ( Homo sapiens ... 31 6.5
AK125824-1|BAC86307.1| 280|Homo sapiens protein ( Homo sapiens ... 31 6.5
AC079338-2|AAX81996.1| 76|Homo sapiens unknown protein. 31 6.5
>X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein.
Length = 240
Score = 133 bits (321), Expect = 8e-31
Identities = 73/152 (48%), Positives = 85/152 (55%), Gaps = 4/152 (2%)
Frame = +3
Query: 114 MXXGKNNKLQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 293
M GK++K+ QHI+Y +R ILQ R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 294 REEKRTLGFVLLRGENIVSLTIX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 461
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 462 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 557
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein.
Length = 231
Score = 133 bits (321), Expect = 8e-31
Identities = 73/152 (48%), Positives = 85/152 (55%), Gaps = 4/152 (2%)
Frame = +3
Query: 114 MXXGKNNKLQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 293
M GK++K+ QHI+Y +R ILQ R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 294 REEKRTLGFVLLRGENIVSLTIX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 461
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 462 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 557
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gene
for B/B' snRNP associated protein. ).
Length = 231
Score = 133 bits (321), Expect = 8e-31
Identities = 73/152 (48%), Positives = 85/152 (55%), Gaps = 4/152 (2%)
Frame = +3
Query: 114 MXXGKNNKLQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 293
M GK++K+ QHI+Y +R ILQ R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 294 REEKRTLGFVLLRGENIVSLTIX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 461
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 462 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 557
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein.
Length = 285
Score = 133 bits (321), Expect = 8e-31
Identities = 73/152 (48%), Positives = 85/152 (55%), Gaps = 4/152 (2%)
Frame = +3
Query: 114 MXXGKNNKLQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 293
M GK++K+ QHI+Y +R ILQ R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 294 REEKRTLGFVLLRGENIVSLTIX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 461
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 462 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 557
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein.
Length = 240
Score = 133 bits (321), Expect = 8e-31
Identities = 73/152 (48%), Positives = 85/152 (55%), Gaps = 4/152 (2%)
Frame = +3
Query: 114 MXXGKNNKLQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 293
M GK++K+ QHI+Y +R ILQ R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 294 REEKRTLGFVLLRGENIVSLTIX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 461
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 462 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 557
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 133 bits (321), Expect = 8e-31
Identities = 73/152 (48%), Positives = 85/152 (55%), Gaps = 4/152 (2%)
Frame = +3
Query: 114 MXXGKNNKLQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 293
M GK++K+ QHI+Y +R ILQ R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 294 REEKRTLGFVLLRGENIVSLTIX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 461
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 462 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 557
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein.
Length = 234
Score = 133 bits (321), Expect = 8e-31
Identities = 73/152 (48%), Positives = 85/152 (55%), Gaps = 4/152 (2%)
Frame = +3
Query: 114 MXXGKNNKLQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 293
M GK++K+ QHI+Y +R ILQ R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 294 REEKRTLGFVLLRGENIVSLTIX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 461
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 462 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 557
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 240
Score = 133 bits (321), Expect = 8e-31
Identities = 73/152 (48%), Positives = 85/152 (55%), Gaps = 4/152 (2%)
Frame = +3
Query: 114 MXXGKNNKLQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 293
M GK++K+ QHI+Y +R ILQ R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 294 REEKRTLGFVLLRGENIVSLTIX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 461
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 462 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 557
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 133 bits (321), Expect = 8e-31
Identities = 73/152 (48%), Positives = 85/152 (55%), Gaps = 4/152 (2%)
Frame = +3
Query: 114 MXXGKNNKLQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 293
M GK++K+ QHI+Y +R ILQ R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 294 REEKRTLGFVLLRGENIVSLTIX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 461
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 462 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 557
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptide B protein.
Length = 231
Score = 131 bits (317), Expect = 3e-30
Identities = 72/152 (47%), Positives = 85/152 (55%), Gaps = 4/152 (2%)
Frame = +3
Query: 114 MXXGKNNKLQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 293
M GK++K+ QHI+Y +R ILQ R FIGTFKAFDKHMNLIL DC+EFRKIK KNS+ A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSEQAE 60
Query: 294 REEKRTLGFVLLRGENIVSLTIX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 461
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 462 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 557
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>X15892-1|CAA33901.1| 240|Homo sapiens protein ( Human hcerN3 gene
mRNA for N snRNP associated protein. ).
Length = 240
Score = 130 bits (313), Expect = 8e-30
Identities = 71/152 (46%), Positives = 84/152 (55%), Gaps = 4/152 (2%)
Frame = +3
Query: 114 MXXGKNNKLQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 293
M GK++K+ QHI+Y +R ILQ R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 294 REEKRTLGFVLLRGENIVSLTIX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 461
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 462 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 557
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>U41303-1|AAA98969.1| 240|Homo sapiens small nuclear
ribonuleoprotein particle N protein.
Length = 240
Score = 130 bits (313), Expect = 8e-30
Identities = 71/152 (46%), Positives = 84/152 (55%), Gaps = 4/152 (2%)
Frame = +3
Query: 114 MXXGKNNKLQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 293
M GK++K+ QHI+Y +R ILQ R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 294 REEKRTLGFVLLRGENIVSLTIX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 461
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 462 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 557
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>J04615-1|AAA36617.1| 240|Homo sapiens protein ( Human lupus
autoantigen (small nuclear ribonuclepoprotein, snRNP,
SM-D) mRNA, complete cds. ).
Length = 240
Score = 130 bits (313), Expect = 8e-30
Identities = 71/152 (46%), Positives = 84/152 (55%), Gaps = 4/152 (2%)
Frame = +3
Query: 114 MXXGKNNKLQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 293
M GK++K+ QHI+Y +R ILQ R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 294 REEKRTLGFVLLRGENIVSLTIX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 461
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 462 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 557
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>CR450350-1|CAG29346.1| 240|Homo sapiens SNRPN protein.
Length = 240
Score = 130 bits (313), Expect = 8e-30
Identities = 71/152 (46%), Positives = 84/152 (55%), Gaps = 4/152 (2%)
Frame = +3
Query: 114 MXXGKNNKLQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 293
M GK++K+ QHI+Y +R ILQ R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 294 REEKRTLGFVLLRGENIVSLTIX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 461
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 462 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 557
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>BC025178-1|AAH25178.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 130 bits (313), Expect = 8e-30
Identities = 71/152 (46%), Positives = 84/152 (55%), Gaps = 4/152 (2%)
Frame = +3
Query: 114 MXXGKNNKLQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 293
M GK++K+ QHI+Y +R ILQ R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 294 REEKRTLGFVLLRGENIVSLTIX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 461
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 462 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 557
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>BC024777-1|AAH24777.1| 240|Homo sapiens SNURF protein protein.
Length = 240
Score = 130 bits (313), Expect = 8e-30
Identities = 71/152 (46%), Positives = 84/152 (55%), Gaps = 4/152 (2%)
Frame = +3
Query: 114 MXXGKNNKLQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 293
M GK++K+ QHI+Y +R ILQ R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 294 REEKRTLGFVLLRGENIVSLTIX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 461
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 462 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 557
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>BC003180-1|AAH03180.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 130 bits (313), Expect = 8e-30
Identities = 71/152 (46%), Positives = 84/152 (55%), Gaps = 4/152 (2%)
Frame = +3
Query: 114 MXXGKNNKLQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 293
M GK++K+ QHI+Y +R ILQ R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 294 REEKRTLGFVLLRGENIVSLTIX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 461
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 462 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 557
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>BC000611-1|AAH00611.1| 240|Homo sapiens SNRPN protein protein.
Length = 240
Score = 130 bits (313), Expect = 8e-30
Identities = 71/152 (46%), Positives = 84/152 (55%), Gaps = 4/152 (2%)
Frame = +3
Query: 114 MXXGKNNKLQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 293
M GK++K+ QHI+Y +R ILQ R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 294 REEKRTLGFVLLRGENIVSLTIX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 461
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 462 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 557
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>AF400432-1|AAK92481.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 130 bits (313), Expect = 8e-30
Identities = 71/152 (46%), Positives = 84/152 (55%), Gaps = 4/152 (2%)
Frame = +3
Query: 114 MXXGKNNKLQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 293
M GK++K+ QHI+Y +R ILQ R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 294 REEKRTLGFVLLRGENIVSLTIX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 461
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 462 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 557
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>AK222633-1|BAD96353.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N variant protein.
Length = 240
Score = 128 bits (309), Expect = 2e-29
Identities = 71/152 (46%), Positives = 83/152 (54%), Gaps = 4/152 (2%)
Frame = +3
Query: 114 MXXGKNNKLQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 293
M GK++K+ QHI+Y +R ILQ R FIGTFKAFDKHMNLIL DC EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCGEFRKIKPKNAKQPE 60
Query: 294 REEKRTLGFVLLRGENIVSLTIX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 461
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 462 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 557
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>AF134825-2|AAD54488.1| 234|Homo sapiens small nuclear
ribonucleoprotein B protein.
Length = 234
Score = 128 bits (308), Expect = 3e-29
Identities = 59/82 (71%), Positives = 69/82 (84%)
Frame = +3
Query: 114 MXXGKNNKLQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 293
M GK++K+ QHI+Y +R ILQ R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 294 REEKRTLGFVLLRGENIVSLTI 359
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTV 82
>AF134825-1|AAD54489.1| 243|Homo sapiens small nuclear
ribonucleoprotein B' protein.
Length = 243
Score = 128 bits (308), Expect = 3e-29
Identities = 59/82 (71%), Positives = 69/82 (84%)
Frame = +3
Query: 114 MXXGKNNKLQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 293
M GK++K+ QHI+Y +R ILQ R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 294 REEKRTLGFVLLRGENIVSLTI 359
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTV 82
>M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB' mRNA, 3' end. ).
Length = 233
Score = 126 bits (304), Expect = 1e-28
Identities = 70/145 (48%), Positives = 80/145 (55%), Gaps = 4/145 (2%)
Frame = +3
Query: 135 KLQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 314
K+ QHI+Y +R ILQ R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+REEKR L
Sbjct: 1 KMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVL 60
Query: 315 GFVLLRGENIVSLTIX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 482
G VLLRGEN+VS+T+
Sbjct: 61 GLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGL 120
Query: 483 XXXXRGVGGPSQQHMAPGNRGQLSA 557
RGVGGPSQQ M P RG ++A
Sbjct: 121 AGPVRGVGGPSQQVMTPQGRGTVAA 145
>M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB mRNA, 3' end. ).
Length = 224
Score = 126 bits (304), Expect = 1e-28
Identities = 70/145 (48%), Positives = 80/145 (55%), Gaps = 4/145 (2%)
Frame = +3
Query: 135 KLQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 314
K+ QHI+Y +R ILQ R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+REEKR L
Sbjct: 1 KMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVL 60
Query: 315 GFVLLRGENIVSLTIX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 482
G VLLRGEN+VS+T+
Sbjct: 61 GLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGL 120
Query: 483 XXXXRGVGGPSQQHMAPGNRGQLSA 557
RGVGGPSQQ M P RG ++A
Sbjct: 121 AGPVRGVGGPSQQVMTPQGRGTVAA 145
>X16163-1|CAA34288.1| 218|Homo sapiens SmB /B' autoimmune antigene
protein.
Length = 218
Score = 104 bits (250), Expect = 3e-22
Identities = 59/128 (46%), Positives = 67/128 (52%), Gaps = 4/128 (3%)
Frame = +3
Query: 186 RTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTIX- 362
R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +REEKR LG VLLRGEN+VS+T+
Sbjct: 3 RIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEG 62
Query: 363 ---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVGGPSQQHMAP 533
RGVGGPSQQ M P
Sbjct: 63 PPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTP 122
Query: 534 GNRGQLSA 557
RG ++A
Sbjct: 123 QGRGTVAA 130
>BC065369-1|AAH65369.1| 208|Homo sapiens Unknown (protein for
MGC:71285) protein.
Length = 208
Score = 85.4 bits (202), Expect = 2e-16
Identities = 39/65 (60%), Positives = 49/65 (75%)
Frame = +3
Query: 123 GKNNKLQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREE 302
GK++K+ H ++ +R ILQ R FIGTFKAFDKHMN+I DC+EFRK+K KN+K REE
Sbjct: 44 GKSSKMLPHTDHRMRRILQDGRVFIGTFKAFDKHMNMIPCDCDEFRKMKLKNAKQPAREE 103
Query: 303 KRTLG 317
KR G
Sbjct: 104 KRVSG 108
>AL513477-10|CAI22612.3| 208|Homo sapiens small nuclear
ribonucleoprotein N (SNRPN) pseudogene protein.
Length = 208
Score = 85.4 bits (202), Expect = 2e-16
Identities = 39/65 (60%), Positives = 49/65 (75%)
Frame = +3
Query: 123 GKNNKLQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREE 302
GK++K+ H ++ +R ILQ R FIGTFKAFDKHMN+I DC+EFRK+K KN+K REE
Sbjct: 44 GKSSKMLPHTDHRMRRILQDGRVFIGTFKAFDKHMNMIPCDCDEFRKMKLKNAKQPAREE 103
Query: 303 KRTLG 317
KR G
Sbjct: 104 KRVSG 108
>BC059944-1|AAH59944.1| 125|Homo sapiens LSMD1 protein protein.
Length = 125
Score = 46.4 bits (105), Expect = 1e-04
Identities = 26/84 (30%), Positives = 44/84 (52%)
Frame = +3
Query: 108 DKMXXGKNNKLQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKT 287
D +L+ +N +R+ + RT +G F D+ N+ILG +EF +K +S +
Sbjct: 35 DSAAERARQQLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEF--LKPSDSFS 92
Query: 288 ADREEKRTLGFVLLRGENIVSLTI 359
A E R LG ++ G +IVS+ +
Sbjct: 93 AG--EPRVLGLAMVPGHHIVSIEV 114
>BC051846-1|AAH51846.1| 125|Homo sapiens LSMD1 protein protein.
Length = 125
Score = 46.4 bits (105), Expect = 1e-04
Identities = 26/84 (30%), Positives = 44/84 (52%)
Frame = +3
Query: 108 DKMXXGKNNKLQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKT 287
D +L+ +N +R+ + RT +G F D+ N+ILG +EF +K +S +
Sbjct: 35 DSAAERARQQLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEF--LKPSDSFS 92
Query: 288 ADREEKRTLGFVLLRGENIVSLTI 359
A E R LG ++ G +IVS+ +
Sbjct: 93 AG--EPRVLGLAMVPGHHIVSIEV 114
>BC033861-1|AAH33861.1| 173|Homo sapiens LSM domain containing 1
protein.
Length = 173
Score = 46.4 bits (105), Expect = 1e-04
Identities = 26/84 (30%), Positives = 44/84 (52%)
Frame = +3
Query: 108 DKMXXGKNNKLQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKT 287
D +L+ +N +R+ + RT +G F D+ N+ILG +EF +K +S +
Sbjct: 83 DSAAERARQQLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEF--LKPSDSFS 140
Query: 288 ADREEKRTLGFVLLRGENIVSLTI 359
A E R LG ++ G +IVS+ +
Sbjct: 141 AG--EPRVLGLAMVPGHHIVSIEV 162
>BC006407-1|AAH06407.1| 125|Homo sapiens LSMD1 protein protein.
Length = 125
Score = 46.4 bits (105), Expect = 1e-04
Identities = 26/84 (30%), Positives = 44/84 (52%)
Frame = +3
Query: 108 DKMXXGKNNKLQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKT 287
D +L+ +N +R+ + RT +G F D+ N+ILG +EF +K +S +
Sbjct: 35 DSAAERARQQLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEF--LKPSDSFS 92
Query: 288 ADREEKRTLGFVLLRGENIVSLTI 359
A E R LG ++ G +IVS+ +
Sbjct: 93 AG--EPRVLGLAMVPGHHIVSIEV 114
>AF530060-1|AAQ09944.1| 125|Homo sapiens phosphonoformate
immuno-associated protein 2 protein.
Length = 125
Score = 46.4 bits (105), Expect = 1e-04
Identities = 26/84 (30%), Positives = 44/84 (52%)
Frame = +3
Query: 108 DKMXXGKNNKLQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKT 287
D +L+ +N +R+ + RT +G F D+ N+ILG +EF +K +S +
Sbjct: 35 DSAAERARQQLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEF--LKPSDSFS 92
Query: 288 ADREEKRTLGFVLLRGENIVSLTI 359
A E R LG ++ G +IVS+ +
Sbjct: 93 AG--EPRVLGLAMVPGHHIVSIEV 114
>BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein.
Length = 67
Score = 42.3 bits (95), Expect = 0.002
Identities = 25/69 (36%), Positives = 36/69 (52%)
Frame = +3
Query: 138 LQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 317
L+ +IN V VI R +GT K FD+ +NLIL + E R S E+ LG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE-RVFSSSQG-----VEQVVLG 58
Query: 318 FVLLRGENI 344
++RG+N+
Sbjct: 59 LYIVRGDNV 67
>BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 42.3 bits (95), Expect = 0.002
Identities = 25/69 (36%), Positives = 36/69 (52%)
Frame = +3
Query: 138 LQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 317
L+ +IN V VI R +GT K FD+ +NLIL + E R S E+ LG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE-RVFSSSQG-----VEQVVLG 58
Query: 318 FVLLRGENI 344
++RG+N+
Sbjct: 59 LYIVRGDNV 67
>BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 42.3 bits (95), Expect = 0.002
Identities = 25/69 (36%), Positives = 36/69 (52%)
Frame = +3
Query: 138 LQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 317
L+ +IN V VI R +GT K FD+ +NLIL + E R S E+ LG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE-RVFSSSQG-----VEQVVLG 58
Query: 318 FVLLRGENI 344
++RG+N+
Sbjct: 59 LYIVRGDNV 67
>AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated
Sm-like protein LSm8 protein.
Length = 96
Score = 42.3 bits (95), Expect = 0.002
Identities = 25/69 (36%), Positives = 36/69 (52%)
Frame = +3
Query: 138 LQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 317
L+ +IN V VI R +GT K FD+ +NLIL + E R S E+ LG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE-RVFSSSQG-----VEQVVLG 58
Query: 318 FVLLRGENI 344
++RG+N+
Sbjct: 59 LYIVRGDNV 67
>AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1
protein.
Length = 96
Score = 42.3 bits (95), Expect = 0.002
Identities = 25/69 (36%), Positives = 36/69 (52%)
Frame = +3
Query: 138 LQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 317
L+ +IN V VI R +GT K FD+ +NLIL + E R S E+ LG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE-RVFSSSQG-----VEQVVLG 58
Query: 318 FVLLRGENI 344
++RG+N+
Sbjct: 59 LYIVRGDNV 67
>BC018621-1|AAH18621.1| 103|Homo sapiens LSM7 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 103
Score = 39.9 bits (89), Expect = 0.011
Identities = 23/70 (32%), Positives = 35/70 (50%)
Frame = +3
Query: 138 LQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 317
L ++I+ +RV Q R G K FD +NL+L E+ + K E+ R LG
Sbjct: 15 LSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLT--EDTRQLG 72
Query: 318 FVLLRGENIV 347
V+ RG ++V
Sbjct: 73 LVVCRGTSVV 82
>AF182293-1|AAD56231.1| 103|Homo sapiens U6 snRNA-associated
Sm-like protein LSm7 protein.
Length = 103
Score = 39.9 bits (89), Expect = 0.011
Identities = 23/70 (32%), Positives = 35/70 (50%)
Frame = +3
Query: 138 LQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 317
L ++I+ +RV Q R G K FD +NL+L E+ + K E+ R LG
Sbjct: 15 LSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLT--EDTRQLG 72
Query: 318 FVLLRGENIV 347
V+ RG ++V
Sbjct: 73 LVVCRGTSVV 82
>AC005258-2|AAG45442.1| 103|Homo sapiens U6 snRNA-associated
Sm-like protein LSm7 protein.
Length = 103
Score = 39.9 bits (89), Expect = 0.011
Identities = 23/70 (32%), Positives = 35/70 (50%)
Frame = +3
Query: 138 LQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 317
L ++I+ +RV Q R G K FD +NL+L E+ + K E+ R LG
Sbjct: 15 LSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLT--EDTRQLG 72
Query: 318 FVLLRGENIV 347
V+ RG ++V
Sbjct: 73 LVVCRGTSVV 82
>CR457185-1|CAG33466.1| 102|Homo sapiens LSM3 protein.
Length = 102
Score = 37.1 bits (82), Expect = 0.075
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Frame = +3
Query: 162 VRVILQXSRTFIGTFKAFDKHMNLILGDCEE---FRKIKSKNSKTADREEKRTLGFVLLR 332
+ V ++ R G A+D+H+N+ILGD EE +I + + + KR + + +R
Sbjct: 29 IYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVR 88
Query: 333 GENIV 347
G+ +V
Sbjct: 89 GDGVV 93
>BC007055-1|AAH07055.1| 102|Homo sapiens LSM3 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 102
Score = 37.1 bits (82), Expect = 0.075
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Frame = +3
Query: 162 VRVILQXSRTFIGTFKAFDKHMNLILGDCEE---FRKIKSKNSKTADREEKRTLGFVLLR 332
+ V ++ R G A+D+H+N+ILGD EE +I + + + KR + + +R
Sbjct: 29 IYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVR 88
Query: 333 GENIV 347
G+ +V
Sbjct: 89 GDGVV 93
>AJ238095-1|CAB45866.1| 102|Homo sapiens Lsm3 protein protein.
Length = 102
Score = 37.1 bits (82), Expect = 0.075
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Frame = +3
Query: 162 VRVILQXSRTFIGTFKAFDKHMNLILGDCEE---FRKIKSKNSKTADREEKRTLGFVLLR 332
+ V ++ R G A+D+H+N+ILGD EE +I + + + KR + + +R
Sbjct: 29 IYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVR 88
Query: 333 GENIV 347
G+ +V
Sbjct: 89 GDGVV 93
>AF182418-1|AAG14954.1| 102|Homo sapiens MDS017 protein.
Length = 102
Score = 37.1 bits (82), Expect = 0.075
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Frame = +3
Query: 162 VRVILQXSRTFIGTFKAFDKHMNLILGDCEE---FRKIKSKNSKTADREEKRTLGFVLLR 332
+ V ++ R G A+D+H+N+ILGD EE +I + + + KR + + +R
Sbjct: 29 IYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVR 88
Query: 333 GENIV 347
G+ +V
Sbjct: 89 GDGVV 93
>AF182289-1|AAD56227.1| 102|Homo sapiens U6 snRNA-associated
Sm-like protein LSm3 protein.
Length = 102
Score = 37.1 bits (82), Expect = 0.075
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Frame = +3
Query: 162 VRVILQXSRTFIGTFKAFDKHMNLILGDCEE---FRKIKSKNSKTADREEKRTLGFVLLR 332
+ V ++ R G A+D+H+N+ILGD EE +I + + + KR + + +R
Sbjct: 29 IYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVR 88
Query: 333 GENIV 347
G+ +V
Sbjct: 89 GDGVV 93
>X12466-1|CAA31007.1| 92|Homo sapiens protein ( Human mRNA for
snRNP E protein. ).
Length = 92
Score = 36.7 bits (81), Expect = 0.100
Identities = 25/72 (34%), Positives = 37/72 (51%)
Frame = +3
Query: 138 LQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 317
LQ V + Q + G FD++MNL+L D EE +SKT R++ LG
Sbjct: 25 LQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEI------HSKTKSRKQ---LG 75
Query: 318 FVLLRGENIVSL 353
++L+G+NI L
Sbjct: 76 RIMLKGDNITLL 87
>M37716-1|AAA90926.1| 92|Homo sapiens small nuclear RNA protein
(snRNP E) protein.
Length = 92
Score = 36.7 bits (81), Expect = 0.100
Identities = 25/72 (34%), Positives = 37/72 (51%)
Frame = +3
Query: 138 LQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 317
LQ V + Q + G FD++MNL+L D EE +SKT R++ LG
Sbjct: 25 LQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEI------HSKTKSRKQ---LG 75
Query: 318 FVLLRGENIVSL 353
++L+G+NI L
Sbjct: 76 RIMLKGDNITLL 87
>M21258-1|AAB59365.1| 92|Homo sapiens protein ( Human small
nuclear ribonucleoprotein (snRNP) E gene, exon 5 and Alu
repeats copy N and O. ).
Length = 92
Score = 36.7 bits (81), Expect = 0.100
Identities = 25/72 (34%), Positives = 37/72 (51%)
Frame = +3
Query: 138 LQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 317
LQ V + Q + G FD++MNL+L D EE +SKT R++ LG
Sbjct: 25 LQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEI------HSKTKSRKQ---LG 75
Query: 318 FVLLRGENIVSL 353
++L+G+NI L
Sbjct: 76 RIMLKGDNITLL 87
>M15919-1|AAA36621.1| 81|Homo sapiens protein ( Human autoimmune
antigen small nuclear ribonucleoprotein E mRNA. ).
Length = 81
Score = 36.7 bits (81), Expect = 0.100
Identities = 25/72 (34%), Positives = 37/72 (51%)
Frame = +3
Query: 138 LQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 317
LQ V + Q + G FD++MNL+L D EE +SKT R++ LG
Sbjct: 14 LQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEI------HSKTKSRKQ---LG 64
Query: 318 FVLLRGENIVSL 353
++L+G+NI L
Sbjct: 65 RIMLKGDNITLL 76
>BC090951-1|AAH90951.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E protein.
Length = 92
Score = 36.7 bits (81), Expect = 0.100
Identities = 25/72 (34%), Positives = 37/72 (51%)
Frame = +3
Query: 138 LQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 317
LQ V + Q + G FD++MNL+L D EE +SKT R++ LG
Sbjct: 25 LQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEI------HSKTKSRKQ---LG 75
Query: 318 FVLLRGENIVSL 353
++L+G+NI L
Sbjct: 76 RIMLKGDNITLL 87
>BC002639-1|AAH02639.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E protein.
Length = 92
Score = 36.7 bits (81), Expect = 0.100
Identities = 25/72 (34%), Positives = 37/72 (51%)
Frame = +3
Query: 138 LQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 317
LQ V + Q + G FD++MNL+L D EE +SKT R++ LG
Sbjct: 25 LQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEI------HSKTKSRKQ---LG 75
Query: 318 FVLLRGENIVSL 353
++L+G+NI L
Sbjct: 76 RIMLKGDNITLL 87
>AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E-like 1 protein.
Length = 92
Score = 36.7 bits (81), Expect = 0.100
Identities = 25/72 (34%), Positives = 37/72 (51%)
Frame = +3
Query: 138 LQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 317
LQ V + Q + G FD++MNL+L D EE +SKT R++ LG
Sbjct: 25 LQNRSQIQVWLYEQVNMQIEGCIIGFDEYMNLVLDDAEEI------HSKTKSRKQ---LG 75
Query: 318 FVLLRGENIVSL 353
++L+G+NI L
Sbjct: 76 RIMLKGDNITLL 87
>X58233-1|CAA41191.1| 50|Homo sapiens 36/8-3 fusion protein with
epitope for anti-lectin antibody protein.
Length = 50
Score = 33.5 bits (73), Expect = 0.93
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 533 RKSWSTFCSSSNARRPHDGWPSSRNDGSSSWHGSW 637
R+ WS SS+ A RPH GW S + G S+ W
Sbjct: 1 RRRWSG-ASSAPAVRPHQGWSQSSHRGDSAHQSPW 34
>U15008-1|AAC13776.1| 118|Homo sapiens Sm D2 protein.
Length = 118
Score = 33.1 bits (72), Expect = 1.2
Identities = 19/86 (22%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Frame = +3
Query: 108 DKMXXGKNNKLQQHINYXVRVIL--QXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNS 281
++ G + L Q + +V++ + ++ +G KAFD+H N++L + +E K+
Sbjct: 22 EEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSG 81
Query: 282 KTADR----EEKRTLGFVLLRGENIV 347
K + + R + + LRG++++
Sbjct: 82 KGKKKSKPVNKDRYISKMFLRGDSVI 107
>BC001930-1|AAH01930.1| 118|Homo sapiens small nuclear
ribonucleoprotein D2 polypeptide 16.5kDa protein.
Length = 118
Score = 33.1 bits (72), Expect = 1.2
Identities = 19/86 (22%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Frame = +3
Query: 108 DKMXXGKNNKLQQHINYXVRVIL--QXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNS 281
++ G + L Q + +V++ + ++ +G KAFD+H N++L + +E K+
Sbjct: 22 EEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSG 81
Query: 282 KTADR----EEKRTLGFVLLRGENIV 347
K + + R + + LRG++++
Sbjct: 82 KGKKKSKPVNKDRYISKMFLRGDSVI 107
>BC000486-1|AAH00486.1| 118|Homo sapiens small nuclear
ribonucleoprotein D2 polypeptide 16.5kDa protein.
Length = 118
Score = 33.1 bits (72), Expect = 1.2
Identities = 19/86 (22%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Frame = +3
Query: 108 DKMXXGKNNKLQQHINYXVRVIL--QXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNS 281
++ G + L Q + +V++ + ++ +G KAFD+H N++L + +E K+
Sbjct: 22 EEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSG 81
Query: 282 KTADR----EEKRTLGFVLLRGENIV 347
K + + R + + LRG++++
Sbjct: 82 KGKKKSKPVNKDRYISKMFLRGDSVI 107
>AC007191-2|AAD22673.1| 118|Homo sapiens SMD2_HUMAN protein.
Length = 118
Score = 33.1 bits (72), Expect = 1.2
Identities = 19/86 (22%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Frame = +3
Query: 108 DKMXXGKNNKLQQHINYXVRVIL--QXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNS 281
++ G + L Q + +V++ + ++ +G KAFD+H N++L + +E K+
Sbjct: 22 EEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSG 81
Query: 282 KTADR----EEKRTLGFVLLRGENIV 347
K + + R + + LRG++++
Sbjct: 82 KGKKKSKPVNKDRYISKMFLRGDSVI 107
>BC005938-1|AAH05938.1| 91|Homo sapiens LSM5 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 91
Score = 31.5 bits (68), Expect = 3.7
Identities = 18/68 (26%), Positives = 30/68 (44%)
Frame = +3
Query: 150 INYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLL 329
I + ++++ + +GT FD +N++L D EF T + L +LL
Sbjct: 22 IGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEF-------EITPEGRRITKLDQILL 74
Query: 330 RGENIVSL 353
G NI L
Sbjct: 75 NGNNITML 82
>AJ238097-1|CAB45868.1| 91|Homo sapiens Lsm5 protein protein.
Length = 91
Score = 31.5 bits (68), Expect = 3.7
Identities = 18/68 (26%), Positives = 30/68 (44%)
Frame = +3
Query: 150 INYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLL 329
I + ++++ + +GT FD +N++L D EF T + L +LL
Sbjct: 22 IGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEF-------EITPEGRRITKLDQILL 74
Query: 330 RGENIVSL 353
G NI L
Sbjct: 75 NGNNITML 82
>AF182291-1|AAD56229.1| 91|Homo sapiens U6 snRNA-associated
Sm-like protein LSm5 protein.
Length = 91
Score = 31.5 bits (68), Expect = 3.7
Identities = 18/68 (26%), Positives = 30/68 (44%)
Frame = +3
Query: 150 INYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLL 329
I + ++++ + +GT FD +N++L D EF T + L +LL
Sbjct: 22 IGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEF-------EITPEGRRITKLDQILL 74
Query: 330 RGENIVSL 353
G NI L
Sbjct: 75 NGNNITML 82
>X85373-1|CAA59689.1| 76|Homo sapiens Sm protein G protein.
Length = 76
Score = 30.7 bits (66), Expect = 6.5
Identities = 18/73 (24%), Positives = 36/73 (49%)
Frame = +3
Query: 135 KLQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 314
+L++ ++ + + L R G + FD MNL++ +C E A ++ +
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEM----------ATSGQQNNI 57
Query: 315 GFVLLRGENIVSL 353
G V++RG +I+ L
Sbjct: 58 GMVVIRGNSIIML 70
>CR456918-1|CAG33199.1| 76|Homo sapiens SNRPG protein.
Length = 76
Score = 30.7 bits (66), Expect = 6.5
Identities = 18/73 (24%), Positives = 36/73 (49%)
Frame = +3
Query: 135 KLQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 314
+L++ ++ + + L R G + FD MNL++ +C E A ++ +
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEM----------ATSGQQNNI 57
Query: 315 GFVLLRGENIVSL 353
G V++RG +I+ L
Sbjct: 58 GMVVIRGNSIIML 70
>BC106055-1|AAI06056.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 30.7 bits (66), Expect = 6.5
Identities = 18/73 (24%), Positives = 36/73 (49%)
Frame = +3
Query: 135 KLQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 314
+L++ ++ + + L R G + FD MNL++ +C E A ++ +
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEM----------ATSGQQNNI 57
Query: 315 GFVLLRGENIVSL 353
G V++RG +I+ L
Sbjct: 58 GMVVIRGNSIIML 70
>BC071880-1|AAH71880.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 30.7 bits (66), Expect = 6.5
Identities = 18/73 (24%), Positives = 36/73 (49%)
Frame = +3
Query: 135 KLQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 314
+L++ ++ + + L R G + FD MNL++ +C E A ++ +
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEM----------ATSGQQNNI 57
Query: 315 GFVLLRGENIVSL 353
G V++RG +I+ L
Sbjct: 58 GMVVIRGNSIIML 70
>BC070166-1|AAH70166.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 30.7 bits (66), Expect = 6.5
Identities = 18/73 (24%), Positives = 36/73 (49%)
Frame = +3
Query: 135 KLQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 314
+L++ ++ + + L R G + FD MNL++ +C E A ++ +
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEM----------ATSGQQNNI 57
Query: 315 GFVLLRGENIVSL 353
G V++RG +I+ L
Sbjct: 58 GMVVIRGNSIIML 70
>BC066302-1|AAH66302.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 30.7 bits (66), Expect = 6.5
Identities = 18/73 (24%), Positives = 36/73 (49%)
Frame = +3
Query: 135 KLQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 314
+L++ ++ + + L R G + FD MNL++ +C E A ++ +
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEM----------ATSGQQNNI 57
Query: 315 GFVLLRGENIVSL 353
G V++RG +I+ L
Sbjct: 58 GMVVIRGNSIIML 70
>BC022432-1|AAH22432.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 30.7 bits (66), Expect = 6.5
Identities = 18/73 (24%), Positives = 36/73 (49%)
Frame = +3
Query: 135 KLQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 314
+L++ ++ + + L R G + FD MNL++ +C E A ++ +
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEM----------ATSGQQNNI 57
Query: 315 GFVLLRGENIVSL 353
G V++RG +I+ L
Sbjct: 58 GMVVIRGNSIIML 70
>BC000070-1|AAH00070.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 30.7 bits (66), Expect = 6.5
Identities = 18/73 (24%), Positives = 36/73 (49%)
Frame = +3
Query: 135 KLQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 314
+L++ ++ + + L R G + FD MNL++ +C E A ++ +
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEM----------ATSGQQNNI 57
Query: 315 GFVLLRGENIVSL 353
G V++RG +I+ L
Sbjct: 58 GMVVIRGNSIIML 70
>AK128140-1|BAC87294.1| 280|Homo sapiens protein ( Homo sapiens
cDNA FLJ46261 fis, clone TESTI4025062. ).
Length = 280
Score = 30.7 bits (66), Expect = 6.5
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +2
Query: 521 THGTRKSWSTFCSSSNARRPHDGWPSSRNDGSSSWHGSWWARTGSSRNAT 670
THG + ST CS ++ S R+ G+SS SWW+ SS + +
Sbjct: 5 THGMHLTSSTSCSCQSSGTSFTSC-SCRSSGTSSTSRSWWSSGTSSTSCS 53
>AK125824-1|BAC86307.1| 280|Homo sapiens protein ( Homo sapiens
cDNA FLJ43836 fis, clone TESTI4005857. ).
Length = 280
Score = 30.7 bits (66), Expect = 6.5
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +2
Query: 521 THGTRKSWSTFCSSSNARRPHDGWPSSRNDGSSSWHGSWWARTGSSRNAT 670
THG + ST CS ++ S R+ G+SS SWW+ SS + +
Sbjct: 5 THGMHLTSSTSCSCQSSGTSFTSC-SCRSSGTSSTSRSWWSSGTSSTSCS 53
>AC079338-2|AAX81996.1| 76|Homo sapiens unknown protein.
Length = 76
Score = 30.7 bits (66), Expect = 6.5
Identities = 18/73 (24%), Positives = 36/73 (49%)
Frame = +3
Query: 135 KLQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 314
+L++ ++ + + L R G + FD MNL++ +C E A ++ +
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEM----------ATSGQQNNI 57
Query: 315 GFVLLRGENIVSL 353
G V++RG +I+ L
Sbjct: 58 GMVVIRGNSIIML 70
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,100,041
Number of Sequences: 237096
Number of extensions: 1499464
Number of successful extensions: 3357
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 3207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3350
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10092110758
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -