Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_N19
         (814 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92773-2|CAB07132.1|  160|Caenorhabditis elegans Hypothetical pr...   113   2e-25
Z69385-6|CAA93428.1|  104|Caenorhabditis elegans Hypothetical pr...    42   4e-04
AL132865-8|CAB60606.2|  102|Caenorhabditis elegans Hypothetical ...    39   0.005
AC084197-12|AAL00875.1|   98|Caenorhabditis elegans Lsm sm-like ...    37   0.020
Z81071-3|CAB03013.1|   91|Caenorhabditis elegans Hypothetical pr...    35   0.060
Z69302-4|CAA93263.1|  125|Caenorhabditis elegans Hypothetical pr...    34   0.11 
Z78012-3|CAB01413.1|  118|Caenorhabditis elegans Hypothetical pr...    33   0.18 
U42436-7|AAO61428.2|  223|Caenorhabditis elegans Hypothetical pr...    30   2.3  

>Z92773-2|CAB07132.1|  160|Caenorhabditis elegans Hypothetical
           protein W08E3.1 protein.
          Length = 160

 Score =  113 bits (271), Expect = 2e-25
 Identities = 50/82 (60%), Positives = 63/82 (76%)
 Frame = +3

Query: 114 MXXGKNNKLQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 293
           M   KNNK+  H+NY +++ILQ  RTFIG FKAFDKHMN++L +CEE R+IK K  K  D
Sbjct: 1   MTISKNNKMMAHLNYRMKIILQDGRTFIGFFKAFDKHMNILLAECEEHRQIKPKAGKKTD 60

Query: 294 REEKRTLGFVLLRGENIVSLTI 359
            EEKR LG VL+RGE+IVS+T+
Sbjct: 61  GEEKRILGLVLVRGEHIVSMTV 82


>Z69385-6|CAA93428.1|  104|Caenorhabditis elegans Hypothetical
           protein ZK593.7 protein.
          Length = 104

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 22/69 (31%), Positives = 35/69 (50%)
 Frame = +3

Query: 138 LQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 317
           L + ++  +RV  Q  R   G  + FD+ +N++L DC E+ +     S   D  E R LG
Sbjct: 16  LTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDPQNPSVVGD--ETRQLG 73

Query: 318 FVLLRGENI 344
            ++ RG  I
Sbjct: 74  LIVARGTAI 82


>AL132865-8|CAB60606.2|  102|Caenorhabditis elegans Hypothetical
           protein Y62E10A.12 protein.
          Length = 102

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 18/73 (24%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
 Frame = +3

Query: 138 LQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEE---FRKIKSKNSKTADREEKR 308
           L+  ++  V V ++  R   G  +AFD+H+N++L + EE    R++     +   ++ KR
Sbjct: 21  LRLSLDERVYVKMRNDRELRGRLRAFDQHLNMVLSEVEETITTREVDEDTFEEIYKQTKR 80

Query: 309 TLGFVLLRGENIV 347
            +  + +RG++++
Sbjct: 81  VVPMLFVRGDSVI 93


>AC084197-12|AAL00875.1|   98|Caenorhabditis elegans Lsm sm-like
           protein protein 8 protein.
          Length = 98

 Score = 36.7 bits (81), Expect = 0.020
 Identities = 20/69 (28%), Positives = 34/69 (49%)
 Frame = +3

Query: 138 LQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 317
           L  ++N  V V+    R  +G  K FD+ +NL++ D  E    +++   T        LG
Sbjct: 5   LDAYMNRMVNVVTGDGRVIVGLLKGFDQLINLVIEDAHERSYSETEGVLTT------PLG 58

Query: 318 FVLLRGENI 344
             ++RGEN+
Sbjct: 59  LYIIRGENV 67


>Z81071-3|CAB03013.1|   91|Caenorhabditis elegans Hypothetical
           protein F28F8.3 protein.
          Length = 91

 Score = 35.1 bits (77), Expect = 0.060
 Identities = 20/68 (29%), Positives = 33/68 (48%)
 Frame = +3

Query: 150 INYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLL 329
           I   + VI++  +  +GT   FD ++N++L D  E+         TAD +    L  +LL
Sbjct: 22  IGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEY-------ENTADGKRMTKLDTILL 74

Query: 330 RGENIVSL 353
            G +I  L
Sbjct: 75  NGNHITML 82


>Z69302-4|CAA93263.1|  125|Caenorhabditis elegans Hypothetical
           protein F40F8.9 protein.
          Length = 125

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 21/69 (30%), Positives = 36/69 (52%)
 Frame = +3

Query: 138 LQQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 317
           L + ++  + V+L+  R  IG  ++ D+  NLIL D  E   ++    +T         G
Sbjct: 14  LFEQLDKKLLVVLRDGRKLIGFLRSIDQFANLILEDVVERTFVEKYFCETGQ-------G 66

Query: 318 FVLLRGENI 344
           F+L+RGEN+
Sbjct: 67  FMLIRGENV 75


>Z78012-3|CAB01413.1|  118|Caenorhabditis elegans Hypothetical
           protein C52E4.3 protein.
          Length = 118

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
 Frame = +3

Query: 153 NYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEEF----RKIKSKNSKTADREEKRTLGF 320
           N+ V +  + ++  +G  KAFD+H N++L + +E      K      K     + R +  
Sbjct: 39  NHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKSVAKDRFISK 98

Query: 321 VLLRGENIV 347
           + LRG++++
Sbjct: 99  MFLRGDSVI 107


>U42436-7|AAO61428.2|  223|Caenorhabditis elegans Hypothetical
           protein C49H3.4 protein.
          Length = 223

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 141 QQHINYXVRVILQXSRTFIGTFKAFDKHMNLILGDCEE 254
           Q+ I   VR  ++  R F G    FD+H NL++ D  E
Sbjct: 120 QKRIEVRVRSAIRIDRIFEGIPTTFDEHFNLMMKDVTE 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,290,986
Number of Sequences: 27780
Number of extensions: 243577
Number of successful extensions: 668
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)