Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_N18
(793 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1119 + 10331275-10331330,10331343-10331462,10332023-10332164 30 1.8
06_01_0947 - 7303828-7304172,7304806-7304898,7304984-7305196,730... 30 1.8
04_02_0008 + 8473198-8475523,8475618-8475967 30 2.4
01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679... 30 2.4
01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626... 30 2.4
01_03_0176 - 13461331-13461573,13464880-13465106,13465214-13465535 29 4.2
06_03_0032 - 15697530-15697669,15699215-15699437,15699823-156999... 28 9.8
06_02_0237 + 13341469-13342259,13342839-13343223,13343314-133434... 28 9.8
>07_01_1119 + 10331275-10331330,10331343-10331462,10332023-10332164
Length = 105
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +1
Query: 241 TKVFRKRNNQGLHALKTPKYKFLTKEELELEIAKANEKADVLLQIPPVLK 390
TK KR LH++K KY+ ++ + ++A +K + +L +PP+LK
Sbjct: 53 TKGSLKRRT-ALHSIKKKKYEKTVQQRDPKDPSRATKKKNNILALPPLLK 101
>06_01_0947 -
7303828-7304172,7304806-7304898,7304984-7305196,
7305318-7305409,7305726-7305818,7305871-7305955
Length = 306
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +1
Query: 625 DEEKFHNLLDRGEYEFVLDRACIQYEPDEPIFQKITSITYQHVDNNKCYNTLRS 786
D+ HN +D G EF+L D + + QH D+N+ N +R+
Sbjct: 9 DQHNQHNHMDNGGDEFLLSLYGFTQHDDNTLVADVVDGITQHSDHNQITNEVRN 62
>04_02_0008 + 8473198-8475523,8475618-8475967
Length = 891
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = +1
Query: 475 TFGIANEERIIIERDTDGTLRSCDHDIRKKLNQVYFPITGRKIREPHMFSDEEKFHNL 648
+FG+ E +R TD S D + K ++ FP T ++ +PHM DE+ H+L
Sbjct: 791 SFGVLLLEMFTAKRPTDTQFGS-DLSLHKYVDSA-FPNTIGEVLDPHMPRDEKVVHDL 846
>01_06_1660 +
38966999-38967001,38967685-38967757,38967841-38967923,
38968042-38968168,38968260-38968339,38968428-38968544,
38968711-38968845,38969046-38969215,38969300-38969417
Length = 301
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 265 NQGLHALKTPKYKFLTKEELELEIAKANEKADVLL 369
NQ + TPKY+F+T +++ +I A D+++
Sbjct: 39 NQDKNKYNTPKYRFVTNKDITAQIVYATIAGDIVM 73
>01_06_1659 +
38961637-38961639,38962361-38962433,38962531-38962613,
38962732-38962858,38962950-38963029,38963112-38963228,
38963393-38963527,38963714-38963883,38963970-38964087
Length = 301
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 265 NQGLHALKTPKYKFLTKEELELEIAKANEKADVLL 369
NQ + TPKY+F+T +++ +I A D+++
Sbjct: 39 NQDKNKYNTPKYRFVTNKDITAQIVYATIAGDIVM 73
>01_03_0176 - 13461331-13461573,13464880-13465106,13465214-13465535
Length = 263
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = -3
Query: 254 RKTLVKSGRVNLFNRFCTFGVKNFGAGSCSPS*NDGT---MFNFRLDI 120
R+ ++ R + FN FC + +K F G +P + T +F+F +D+
Sbjct: 188 RRNFLRGCRAHQFNEFCDYDLKLFIPGCTAPDVEEETFSVVFSFFVDV 235
>06_03_0032 -
15697530-15697669,15699215-15699437,15699823-15699929,
15700047-15700224,15700393-15700455,15700474-15700602,
15701211-15701430,15702162-15702262,15702954-15703062,
15705169-15705290,15705473-15705515,15705848-15705903,
15705983-15706089,15706167-15706342,15706507-15706618,
15706711-15706759,15707184-15707276,15707452-15707571,
15707686-15707787,15709442-15709540,15710103-15710237,
15710421-15710499,15710747-15710822,15710904-15710993,
15711139-15711217,15711304-15711338,15711457-15711531,
15712628-15713375
Length = 1221
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/72 (20%), Positives = 31/72 (43%)
Frame = +1
Query: 172 DPAPKFFTPNVQNLLKRLTRPDFTKVFRKRNNQGLHALKTPKYKFLTKEELELEIAKANE 351
D K F+ N+ LLK + + + G H K + + E+E+ A++
Sbjct: 411 DRGEKHFSSNLSTLLKWSPFTTEDDLLNQFGDMGCHGTKLIVFNLWFNDAWEMELDFASD 470
Query: 352 KADVLLQIPPVL 387
+ D+++ P +
Sbjct: 471 EEDIMISGAPAM 482
>06_02_0237 +
13341469-13342259,13342839-13343223,13343314-13343427,
13343517-13344011
Length = 594
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 610 PHMFSDEE-KFHNLLDRGEYEFVLDRACIQYEPDEP 714
P+M +EE FH +D GEY + +Q E D P
Sbjct: 310 PYMDPEEEWYFHTFMDAGEYGLGVSAVPLQPEADYP 345
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,514,399
Number of Sequences: 37544
Number of extensions: 437754
Number of successful extensions: 909
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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