Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_N18
(793 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC009296-1|AAH09296.1| 360|Homo sapiens mitochondrial ribosomal... 142 2e-33
AF321613-1|AAK01406.1| 360|Homo sapiens GIBT protein protein. 142 2e-33
AF226045-1|AAF86945.1| 360|Homo sapiens GK002 protein. 142 2e-33
AK075436-1|BAC11619.1| 218|Homo sapiens protein ( Homo sapiens ... 118 3e-26
AF063603-1|AAG43162.1| 168|Homo sapiens brain my045 protein pro... 77 1e-13
AB208981-1|BAD92218.1| 195|Homo sapiens mitochondrial ribosomal... 62 2e-09
>BC009296-1|AAH09296.1| 360|Homo sapiens mitochondrial ribosomal
protein S22 protein.
Length = 360
Score = 142 bits (343), Expect = 2e-33
Identities = 77/204 (37%), Positives = 116/204 (56%)
Frame = +1
Query: 181 PKFFTPNVQNLLKRLTRPDFTKVFRKRNNQGLHALKTPKYKFLTKEELELEIAKANEKAD 360
P F VQ++L ++T + K F+ + LK P YK +T+ +LE +A E A
Sbjct: 68 PTFMDEEVQSILTKMTGLNLQKTFKP----AIQELKPPTYKLMTQAQLEEATRQAVEAAK 123
Query: 361 VLLQIPPVLKIHKPIDEVLSRDPALIGYDTSKYLFTDITFGIANEERIIIERDTDGTLRS 540
V L++PPVL+ PI++VL+ D L G +T+KY+FTDI++ I + ER I+ R+ GTLR
Sbjct: 124 VRLKMPPVLEERVPINDVLAEDKILEGTETTKYVFTDISYSIPHRERFIVVREPSGTLRK 183
Query: 541 CDHDIRKKLNQVYFPITGRKIREPHMFSDEEKFHNLLDRGEYEFVLDRACIQYEPDEPIF 720
+ R ++ QVYFP GRKI P +F EE + + + VL+ Q+EPD +
Sbjct: 184 ASWEERDRMIQVYFPKEGRKILTPIIFK-EENLRTMYSQDRHVDVLNLCFAQFEPDSTEY 242
Query: 721 QKITSITYQHVDNNKCYNTLRSXR 792
K+ TY+ +D Y+ LRS R
Sbjct: 243 IKVHHKTYEDIDKRGKYDLLRSTR 266
>AF321613-1|AAK01406.1| 360|Homo sapiens GIBT protein protein.
Length = 360
Score = 142 bits (343), Expect = 2e-33
Identities = 77/204 (37%), Positives = 116/204 (56%)
Frame = +1
Query: 181 PKFFTPNVQNLLKRLTRPDFTKVFRKRNNQGLHALKTPKYKFLTKEELELEIAKANEKAD 360
P F VQ++L ++T + K F+ + LK P YK +T+ +LE +A E A
Sbjct: 68 PTFMDEEVQSILTKMTGLNLQKTFKP----AIQELKPPTYKLMTQAQLEEATRQAVEAAK 123
Query: 361 VLLQIPPVLKIHKPIDEVLSRDPALIGYDTSKYLFTDITFGIANEERIIIERDTDGTLRS 540
V L++PPVL+ PI++VL+ D L G +T+KY+FTDI++ I + ER I+ R+ GTLR
Sbjct: 124 VRLKMPPVLEERVPINDVLAEDKILEGTETTKYVFTDISYSIPHRERFIVVREPSGTLRK 183
Query: 541 CDHDIRKKLNQVYFPITGRKIREPHMFSDEEKFHNLLDRGEYEFVLDRACIQYEPDEPIF 720
+ R ++ QVYFP GRKI P +F EE + + + VL+ Q+EPD +
Sbjct: 184 ASWEERDRMIQVYFPKEGRKILTPIIFK-EENLRTMYSQDRHVDVLNLCFAQFEPDSTEY 242
Query: 721 QKITSITYQHVDNNKCYNTLRSXR 792
K+ TY+ +D Y+ LRS R
Sbjct: 243 IKVHHKTYEDIDKRGKYDLLRSTR 266
>AF226045-1|AAF86945.1| 360|Homo sapiens GK002 protein.
Length = 360
Score = 142 bits (343), Expect = 2e-33
Identities = 77/204 (37%), Positives = 116/204 (56%)
Frame = +1
Query: 181 PKFFTPNVQNLLKRLTRPDFTKVFRKRNNQGLHALKTPKYKFLTKEELELEIAKANEKAD 360
P F VQ++L ++T + K F+ + LK P YK +T+ +LE +A E A
Sbjct: 68 PTFMDEEVQSILTKMTGLNLQKTFKP----AIQELKPPTYKLMTQAQLEEATRQAVEAAK 123
Query: 361 VLLQIPPVLKIHKPIDEVLSRDPALIGYDTSKYLFTDITFGIANEERIIIERDTDGTLRS 540
V L++PPVL+ PI++VL+ D L G +T+KY+FTDI++ I + ER I+ R+ GTLR
Sbjct: 124 VRLKMPPVLEERVPINDVLAEDKILEGTETTKYVFTDISYSIPHRERFIVVREPSGTLRK 183
Query: 541 CDHDIRKKLNQVYFPITGRKIREPHMFSDEEKFHNLLDRGEYEFVLDRACIQYEPDEPIF 720
+ R ++ QVYFP GRKI P +F EE + + + VL+ Q+EPD +
Sbjct: 184 ASWEERDRMIQVYFPKEGRKILTPIIFK-EENLRTMYSQDRHVDVLNLCFAQFEPDSTEY 242
Query: 721 QKITSITYQHVDNNKCYNTLRSXR 792
K+ TY+ +D Y+ LRS R
Sbjct: 243 IKVHHKTYEDIDKRGKYDLLRSTR 266
>AK075436-1|BAC11619.1| 218|Homo sapiens protein ( Homo sapiens
cDNA PSEC0127 fis, clone PLACE1003724, highly similar to
Mitochondrial 28S ribosomal protein S22. ).
Length = 218
Score = 118 bits (283), Expect = 3e-26
Identities = 61/150 (40%), Positives = 91/150 (60%)
Frame = +1
Query: 181 PKFFTPNVQNLLKRLTRPDFTKVFRKRNNQGLHALKTPKYKFLTKEELELEIAKANEKAD 360
P F VQ++L ++T + K F+ + LK P YK +T+ +LE +A E A
Sbjct: 68 PTFMDEEVQSILTKMTGLNLQKTFKP----AIQELKPPTYKLMTQAQLEEATRQAVEAAK 123
Query: 361 VLLQIPPVLKIHKPIDEVLSRDPALIGYDTSKYLFTDITFGIANEERIIIERDTDGTLRS 540
V L++PPVL+ PI++VL+ D L G +T+KY+FTDI++ I + ER I+ R+ GTLR
Sbjct: 124 VRLKMPPVLEERVPINDVLAEDKILEGTETTKYVFTDISYSIPHRERFIVVREPSGTLRK 183
Query: 541 CDHDIRKKLNQVYFPITGRKIREPHMFSDE 630
+ R ++ QVYFP GRKI P +F +E
Sbjct: 184 ASWEERDRMIQVYFPKEGRKILTPIIFKEE 213
>AF063603-1|AAG43162.1| 168|Homo sapiens brain my045 protein
protein.
Length = 168
Score = 76.6 bits (180), Expect = 1e-13
Identities = 40/102 (39%), Positives = 62/102 (60%)
Frame = +1
Query: 181 PKFFTPNVQNLLKRLTRPDFTKVFRKRNNQGLHALKTPKYKFLTKEELELEIAKANEKAD 360
P F VQ++L ++T + K F+ + LK P YK +T+ +LE +A E A
Sbjct: 67 PTFMDEEVQSILTKMTGLNLQKTFKP----AIQELKPPTYKLMTQAQLEEATRQAVEAAK 122
Query: 361 VLLQIPPVLKIHKPIDEVLSRDPALIGYDTSKYLFTDITFGI 486
V L++PPVL+ PI++VL+ D L G +T+KY+FTDI++ I
Sbjct: 123 VRLKMPPVLEERVPINDVLAEDKILEGTETTKYVFTDISYSI 164
>AB208981-1|BAD92218.1| 195|Homo sapiens mitochondrial ribosomal
protein S22 variant protein.
Length = 195
Score = 62.5 bits (145), Expect = 2e-09
Identities = 33/94 (35%), Positives = 49/94 (52%)
Frame = +1
Query: 511 ERDTDGTLRSCDHDIRKKLNQVYFPITGRKIREPHMFSDEEKFHNLLDRGEYEFVLDRAC 690
++ GTLR + R ++ QVYFP GRKI P +F EE + + + VL+
Sbjct: 9 QKQPSGTLRKASWEERDRMIQVYFPKEGRKILTPIIFK-EENLRTMYSQDRHVDVLNLCF 67
Query: 691 IQYEPDEPIFQKITSITYQHVDNNKCYNTLRSXR 792
Q+EPD + K+ TY+ +D Y+ LRS R
Sbjct: 68 AQFEPDSTEYIKVHHKTYEDIDKRGKYDLLRSTR 101
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,888,077
Number of Sequences: 237096
Number of extensions: 2662040
Number of successful extensions: 8597
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8593
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9701808132
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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