Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_N18
         (793 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49909-16|CAB60995.1|  418|Caenorhabditis elegans Hypothetical p...   127   8e-30
Z75535-1|CAA99827.1| 1127|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z82262-4|CAE17770.1|  679|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z48717-3|CAA88606.1|  520|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AF067209-1|AAC16982.2|  553|Caenorhabditis elegans Warthog (hedg...    29   3.8  
AF016418-10|AAK18896.1|  611|Caenorhabditis elegans Hypothetical...    29   5.0  
Z81122-3|CAB54313.1| 1076|Caenorhabditis elegans Hypothetical pr...    28   8.8  
Z81122-2|CAB03354.1| 1074|Caenorhabditis elegans Hypothetical pr...    28   8.8  
U42439-4|AAA83508.1|  582|Caenorhabditis elegans Hypothetical pr...    28   8.8  

>Z49909-16|CAB60995.1|  418|Caenorhabditis elegans Hypothetical
           protein C14A4.14 protein.
          Length = 418

 Score =  127 bits (307), Expect = 8e-30
 Identities = 67/203 (33%), Positives = 113/203 (55%), Gaps = 1/203 (0%)
 Frame = +1

Query: 187 FFTPNVQNLLKRLTRPDFT-KVFRKRNNQGLHALKTPKYKFLTKEELELEIAKANEKADV 363
           F    VQ LL  LT  D   KVFR R        +   +  +T+E LE    +  E+A  
Sbjct: 42  FVEKEVQKLLTDLTEIDLEHKVFRPRRTS---IQQRSHFALMTEERLEKTRERMREEARR 98

Query: 364 LLQIPPVLKIHKPIDEVLSRDPALIGYDTSKYLFTDITFGIANEERIIIERDTDGTLRSC 543
            LQ  PV +  +   ++L++D  L  +DTSK++FTDITF   +++R ++ R+ DGTLR+ 
Sbjct: 99  FLQFVPVKEPREESVQILAKDLELKDFDTSKFVFTDITFDATDQDRTVVVREPDGTLRTA 158

Query: 544 DHDIRKKLNQVYFPITGRKIREPHMFSDEEKFHNLLDRGEYEFVLDRACIQYEPDEPIFQ 723
           + +   ++N+ Y+    R +  P +FSD     N LD+ ++EFVLD AC  YEPD+P + 
Sbjct: 159 NPEEHDRMNRTYYQKPNRSVNPPPLFSD-PNLQNALDKNDHEFVLDWACWFYEPDDPAYV 217

Query: 724 KITSITYQHVDNNKCYNTLRSXR 792
           +++ + +  ++ +  ++ + S R
Sbjct: 218 RLSQLVFDRINESGKFHVVTSTR 240


>Z75535-1|CAA99827.1| 1127|Caenorhabditis elegans Hypothetical
           protein F14B4.3 protein.
          Length = 1127

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 613 HMFSDEEKFHNLLDRGEYEFVLDRA-CIQYEPDEPIFQK 726
           H+ SDEEKFH L    +    L +  C    PD P FQ+
Sbjct: 307 HLDSDEEKFHTLAYMTQKLIALVKGECAPETPDNPQFQE 345


>Z82262-4|CAE17770.1|  679|Caenorhabditis elegans Hypothetical
           protein C43F9.9 protein.
          Length = 679

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 18/43 (41%), Positives = 25/43 (58%)
 Frame = +3

Query: 138 EHCTIILRWRTRPGSKVFYTKCTESIKEIDSARFY*SFPQEKQ 266
           E  T ILR + R  ++V YTK    ++EI++A  Y    QEKQ
Sbjct: 54  EKTTPILRIKVRAVNRVIYTKKDNLLQEIENASEY-KKEQEKQ 95


>Z48717-3|CAA88606.1|  520|Caenorhabditis elegans Hypothetical
           protein T10B9.5 protein.
          Length = 520

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +2

Query: 227 LGQILLKFSARETIKVYMPLKLPNISFSRKKSLNWKL 337
           L QIL K+S   T + ++PLKL  I+ +   +++ KL
Sbjct: 478 LAQILKKYSLETTFETHIPLKLVGIATTAPTNVHLKL 514


>AF067209-1|AAC16982.2|  553|Caenorhabditis elegans Warthog
           (hedgehog-like family)protein 9 protein.
          Length = 553

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +1

Query: 145 VPSFYDGEQDPAPKFFTP--NVQNLLKRLTRPDFTKVFRKRNNQGLHALKTPK 297
           +P+F  G   PAP+FF P   +Q+  K L R +     R+++NQ    +  P+
Sbjct: 467 LPTF--GAAPPAPQFFAPQQQIQDQQKNLQRVNIQAPQREQSNQPAQLMLQPQ 517


>AF016418-10|AAK18896.1|  611|Caenorhabditis elegans Hypothetical
           protein C49G7.1 protein.
          Length = 611

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 3/85 (3%)
 Frame = +1

Query: 34  MLKCL--YLLQKIATKHVKTLIIKYXPCVLVISNR-KLNIVPSFYDGEQDPAPKFFTPNV 204
           M+ CL  Y   +   K  KT  + Y   +    NR + ++     DG+          N 
Sbjct: 226 MVVCLMIYGCTEHGRKTFKTYYLYYYGSIKAFENRWRYSMFLDAIDGKNAILDAVRERNK 285

Query: 205 QNLLKRLTRPDFTKVFRKRNNQGLH 279
            NLLK L    F  V+ K  N  LH
Sbjct: 286 PNLLKALQNGAFVDVYNKFGNTALH 310


>Z81122-3|CAB54313.1| 1076|Caenorhabditis elegans Hypothetical
           protein T13F2.3b protein.
          Length = 1076

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +1

Query: 613 HMFSDEEKFHNLLDRGEYEFVL--DRACIQYEPDEPIFQKITSITYQHVDNNKCYNT 777
           H F  E+ F + LDR   EF++      I++E  +   ++I  IT+  VD+  C NT
Sbjct: 527 HCFDSEKLFEDKLDRKNLEFMIKYHGGDIEFEASK-FHERIHQITHVLVDS--CRNT 580


>Z81122-2|CAB03354.1| 1074|Caenorhabditis elegans Hypothetical
           protein T13F2.3a protein.
          Length = 1074

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +1

Query: 613 HMFSDEEKFHNLLDRGEYEFVL--DRACIQYEPDEPIFQKITSITYQHVDNNKCYNT 777
           H F  E+ F + LDR   EF++      I++E  +   ++I  IT+  VD+  C NT
Sbjct: 525 HCFDSEKLFEDKLDRKNLEFMIKYHGGDIEFEASK-FHERIHQITHVLVDS--CRNT 578


>U42439-4|AAA83508.1|  582|Caenorhabditis elegans Hypothetical
           protein F19C7.2 protein.
          Length = 582

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = +2

Query: 518 TLMELCAVVIMISERN*IRCTFQ*PDAK*ENHTCFLMRKNFTICWTGESTSLFWI 682
           T+ + C  VI ++ +N I   +  PD++      F ++ N  IC+  ES  + ++
Sbjct: 231 TVSDSCGDVIKVAFQNLITKAYSGPDSRALLKQRFKLKSNLKICFPKESNQISYL 285


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,994,510
Number of Sequences: 27780
Number of extensions: 433857
Number of successful extensions: 1184
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1183
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)