Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_N16
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    28   1.4  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    27   2.5  
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|...    27   3.3  
SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1...    26   4.4  
SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    25   7.7  

>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = -1

Query: 494 DLIVLVDCAASGKKIQPSSMPVFFTTAIAPSTTAAGTAIIPFFIQALNTKPD 339
           DL+  ++C     KI P S P +FT   A        A +  F + L+  P+
Sbjct: 536 DLLQAMNCFNESLKINPLSYPTWFTYGCAALELQKYDAAMEAFSRCLSINPE 587


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +1

Query: 244 VGMAVTFTFTTNVAQNIRGKNDKLNYFLGGATSGFVFSAWMKKGIIAVPAAVVLGAI 414
           +GMAV     +  AQ+  G    +N F G     F++S  ++KG   +    V+G+I
Sbjct: 455 IGMAVA----SISAQSSMGMGAFINAFFGSVIEVFLYSVALRKGNAGLVEGSVIGSI 507


>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 570

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +1

Query: 124 TSKYAAVAGLAGASFDVLMFSHPKGFVNTIGRMGYIVGPLVGMAVTFTF 270
           T  Y+ + GL     DV + S+    +NT+  +GYIVG   G  +  TF
Sbjct: 119 TLSYSTILGLFD---DVHITSNQYNNLNTLFYVGYIVGQFPGHYIMQTF 164


>SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +1

Query: 280 VAQNIR--GKNDKLNYFLGGATSG 345
           VA NI   G N K  +FLGGA++G
Sbjct: 151 VASNIEKLGANPKRGFFLGGASAG 174


>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 466 AAQSTKTIKSVKHDWTLLKDIEELKGWTDGSKQ 564
           AA    T+K    +W  L    ELK ++DG+++
Sbjct: 8   AALLVGTLKHAHKEWEALGKYAELKTYSDGTRE 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,670,104
Number of Sequences: 5004
Number of extensions: 56357
Number of successful extensions: 160
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)