Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_N16
         (683 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1512 + 37881055-37881229,37881388-37881444,37881537-378816...    31   1.1  
06_03_0565 - 22308074-22309510,22309670-22309723                       29   2.6  
07_03_0815 + 21707061-21707112,21707394-21708286,21709289-217094...    29   3.4  
10_07_0135 + 13308839-13308899,13310146-13310495,13310574-133107...    29   4.5  
07_01_0026 + 190568-190829,192475-194534,194620-195168                 29   4.5  
08_02_0567 + 18769742-18769790,18769928-18771351                       28   7.9  
05_01_0086 + 569137-569190,569285-569336,570026-570057,570510-57...    28   7.9  
03_03_0035 + 13977150-13979228,13979351-13979824                       28   7.9  

>01_06_1512 +
           37881055-37881229,37881388-37881444,37881537-37881627,
           37881759-37881919,37882002-37882129,37882215-37882352,
           37882665-37882757,37882858-37882975,37883064-37883194
          Length = 363

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +1

Query: 328 GGATSGFVFSAWMKKGIIAVPAAVVLGAIAVVKKTGI 438
           GG   G +F+A +K  ++AV ++  +G   +VKK G+
Sbjct: 12  GGGGGGDLFAANLKGSLLAVASSAFIGVSFIVKKKGL 48


>06_03_0565 - 22308074-22309510,22309670-22309723
          Length = 496

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -1

Query: 479 VDCAASGKKIQPSSMPVFFTTAIAPSTTAAGTAIIPFFIQALNTK 345
           +D    G K+ P+S+PVF  T I          IIPF  +A  T+
Sbjct: 285 MDTRVGGLKVPPASLPVFPVTFIILLAPVYDHIIIPFARRATGTE 329


>07_03_0815 +
           21707061-21707112,21707394-21708286,21709289-21709459,
           21709880-21710143,21710404-21710421
          Length = 465

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -3

Query: 402 YHRGRHRDNPLFHPSTKHKARCGTTQEVIEFIVFPTNILGNVGSECEG 259
           Y  GRHR +  F+PS     +  +    +E +VF    LG V    EG
Sbjct: 279 YPYGRHRQHTKFNPSCDRLLKTFSRIRCLEMLVFIEPHLGGVNPLMEG 326


>10_07_0135 +
           13308839-13308899,13310146-13310495,13310574-13310709,
           13310806-13310942,13311041-13311164,13313393-13313871
          Length = 428

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 235 GPLVGMAVTFTFTTNVAQNIRGKNDKLNYFLGGATSGFVFSAWMKKGIIAVPAAVVLGAI 414
           G ++  +    FT +  +N   KN K +  LG    G+V+  W+ +  +A PA    G +
Sbjct: 62  GEILSSSNLKAFTLSELKNAT-KNFKPDSLLGEGGFGYVYKGWIDEQTLA-PARPGSGMV 119

Query: 415 AVVKK 429
             VKK
Sbjct: 120 VAVKK 124


>07_01_0026 + 190568-190829,192475-194534,194620-195168
          Length = 956

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = +1

Query: 163 SFDVLMFSHPKGFVNTIGRMGYIVGPLVGMAVTFTFTTNV 282
           SF  + F+H +  V+T+GR+  I+   V + +  ++T ++
Sbjct: 635 SFSTMFFAHRENTVSTLGRLVLIIWLFVVLIINSSYTASL 674


>08_02_0567 + 18769742-18769790,18769928-18771351
          Length = 490

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 26/120 (21%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
 Frame = +1

Query: 16  VVSLLLFYNHKKMNXLL-NYKXYXTPEGQXIFMKPFVTSKYAAVAGLAGASFDVLMFSHP 192
           VV++      +KM+ +  N   +    G  +    +VT+    ++ L G++ DV + S  
Sbjct: 332 VVTMSRHVIDEKMSCVFRNVLAFEQDSGAGVERDAYVTAYVVFMSQLLGSAGDVAVLSRS 391

Query: 193 KGFVNTIGRMGYIVGPLVGMAVTFTFTTNVAQNIRGKNDKLNYFLGGATSGFVFSAWMKK 372
               +++G  G       G+A    F T+    +RG   +LN   G   + ++  AW+ +
Sbjct: 392 GVMEHSLGNDGDACALFRGLARGLAFDTDGDHYLRGVGLELNRHHGRRLNRWL--AWVAR 449


>05_01_0086 +
           569137-569190,569285-569336,570026-570057,570510-570543,
           570680-570747,571527-571667
          Length = 126

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 286 QNIRGKNDKLNYFLGGATSGFVFSA 360
           + IRG++D  N  +GGA SG + SA
Sbjct: 72  ERIRGRHDWKNAMIGGALSGALISA 96


>03_03_0035 + 13977150-13979228,13979351-13979824
          Length = 850

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 248 VWQLPSHSL-PTLPKIFVGKTINSITSWVVPHLALCLV 358
           VW +P  SL P   ++FV K I  + SW+    AL  V
Sbjct: 208 VWHVPDVSLLPYTGRLFVSKNIGRLFSWLQVLSALACV 245


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,656,855
Number of Sequences: 37544
Number of extensions: 349683
Number of successful extensions: 824
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)