Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_N14
(699 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi... 224 8e-60
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom... 82 6e-17
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc... 31 0.16
SPBC3F6.03 |trr1|caf4|thioredoxin reductase Trr1|Schizosaccharom... 30 0.28
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar... 29 0.48
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi... 28 1.1
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 28 1.5
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica... 27 2.0
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ... 27 2.0
SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces p... 27 2.6
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 27 3.4
SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic enzyme|Schizosaccha... 27 3.4
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 26 6.0
>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
Dld1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 224 bits (548), Expect = 8e-60
Identities = 107/187 (57%), Positives = 136/187 (72%), Gaps = 2/187 (1%)
Frame = +2
Query: 101 RIATRQYATTHDADLVVIGSGPGGYVAAIKAAQLGMKVVSVEKDPTLGGTCLNVGCIPSK 280
R+ + + + + DL VIG GPGGYVAAI+ AQLG+K + VEK TLGGTCLNVGCIPSK
Sbjct: 34 RLYSAKASGNGEYDLCVIGGGPGGYVAAIRGAQLGLKTICVEKRGTLGGTCLNVGCIPSK 93
Query: 281 ALLHNSHLYHMAKHDFKQRGIETGEVTFDFKKMMEYKANAVKGLTGGIAMLFQKNKVNLV 460
ALL+NSH+YH KHD K+RGI+ V+ + +MM+ K ++VK LT GI LF+KNKV
Sbjct: 94 ALLNNSHIYHTVKHDTKRRGIDVSGVSVNLSQMMKAKDDSVKSLTSGIEYLFKKNKVEYA 153
Query: 461 KGVGTIVAPNKVEVHGEKGV--ETVNTKNILIASGSEVTPFPGVTFDEKQIITSTGALSL 634
KG G+ + P + V G G +T+ KN +IA+GSEV PFPGVT DEK+I++STGALSL
Sbjct: 154 KGTGSFIDPQTLSVKGIDGAADQTIKAKNFIIATGSEVKPFPGVTIDEKKIVSSTGALSL 213
Query: 635 ESVPKKM 655
VPKKM
Sbjct: 214 SEVPKKM 220
>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 464
Score = 82.2 bits (194), Expect = 6e-17
Identities = 61/179 (34%), Positives = 92/179 (51%), Gaps = 7/179 (3%)
Frame = +2
Query: 140 DLVVIGSGPGGYVAAIKAAQLGMKVVSVEKDPTLGGTCLNVGCIPSKALLHNSHLYHMAK 319
D +VIG G GG +A +AA+ G KV +E LGGTC+N GC+P K + + + L K
Sbjct: 9 DYLVIGGGSGGLASARRAAKHGAKVALIEASGRLGGTCVNYGCVPKKIMWNIADLVAKMK 68
Query: 320 HDFKQRGIETGEV-TFDFKKMMEYKANAVKGLTGGI-AMLFQKNKVNLVKGVGTIVAPNK 493
KQ G ++ +FD+ M++ K +A G GI K+ V + G + V+P +
Sbjct: 69 -TAKQNGFPNSQLGSFDW-GMIKRKRDAYIGRLNGIYERNVNKDGVAYISGHASFVSPTE 126
Query: 494 --VEVHGEKGVETVNTKNILIA-SGSEVTP--FPGVTFDEKQIITSTGALSLESVPKKM 655
V+++ G + + K ILIA G + P PG + I S G LES PK++
Sbjct: 127 VAVDMNDGSGTQVFSAKYILIAVGGHPIWPSHIPGAEYG----IDSDGFFELESQPKRV 181
>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 457
Score = 31.1 bits (67), Expect = 0.16
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 128 THDADLVVIGSGPGGYVAAIKAAQLGMKVVSVEKD 232
T DAD+++IG+G G + G KV+ +E+D
Sbjct: 3 TQDADIIIIGAGITGCALGAALGRQGRKVLVLERD 37
>SPBC3F6.03 |trr1|caf4|thioredoxin reductase
Trr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 30.3 bits (65), Expect = 0.28
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +2
Query: 128 THDADLVVIGSGPGGYVAAIKAAQLGMKVVSVE 226
TH+ +V+IGSGP G+ AAI A+ +K V E
Sbjct: 2 THNK-VVIIGSGPAGHTAAIYLARGELKPVMYE 33
>SPAC1093.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 29.5 bits (63), Expect = 0.48
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = -3
Query: 544 NIFGIYSLNTFLSVYFNFIWGNYSSYTFDKINLVLLKEHCDTSCEAFNS 398
NI G+ T LS + ++ NY+ Y+ DKI + KE +T + FNS
Sbjct: 756 NISGLADNYTLLSKHDRAMYNNYADYSPDKIKEIKEKE-LNTYNDYFNS 803
>SPAC20G8.04c |||mitochondrial electron transfer
flavoprotein-ubiquinone
oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 28.3 bits (60), Expect = 1.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 134 DADLVVIGSGPGGYVAAIKAAQLGMK 211
D D+ ++G+GP G AAI+ Q K
Sbjct: 90 DVDVCIVGAGPAGLSAAIRIKQQAAK 115
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 143 LVVIGSGPGGYVAAIKAAQLGMKVVSVEKDPTLGG 247
+ +IGSGP G AA + + G VV E+ GG
Sbjct: 1758 VAIIGSGPAGLAAADQLNRAGHHVVIYERADRPGG 1792
>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
modification enzyme|Schizosaccharomyces pombe|chr
2|||Manual
Length = 666
Score = 27.5 bits (58), Expect = 2.0
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +2
Query: 101 RIATRQYATTHDA--DLVVIGSGPGGYVAAIKAAQLGMKVVSVEK 229
R R + T+ + ++VVIG G G AA A++LG K + K
Sbjct: 3 RTTKRYFCTSFNRRKNVVVIGGGHAGVEAAAAASRLGAKTTLLTK 47
>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 513
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 122 ATTHDADLVVIGSGPGGYVAAIKAAQLGMKVVSVEKDPTLGG 247
+T ++ +VIG G G A LG V+ ++K+ GG
Sbjct: 34 STANNTQAIVIGGGLAGLSATNTILDLGGNVLLLDKNTAFGG 75
>SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -1
Query: 279 FDGIHPTLRQVPPKVGSFSTETTFMPSWAALMAATYP 169
FDG+ L+++P ++ SFST + L +P
Sbjct: 245 FDGVEYALKKIPLRLRSFSTSSNIFRESRTLARLNHP 281
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 616 DWSTFLGVSTEKNVGDWSWSYRFG 687
+W T+ G +T N+ WS S R+G
Sbjct: 892 EWQTYDGNNTYCNLSGWSQSSRYG 915
>SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic
enzyme|Schizosaccharomyces pombe|chr 2|||Manual
Length = 328
Score = 26.6 bits (56), Expect = 3.4
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Frame = +2
Query: 101 RIATRQYATTHD----ADLVVIGSGPGGYVAA--IKAAQLGMKVVSVEKDPTLGG 247
R TR+Y + D +D+V++G+G G AA I + +K+ +E GG
Sbjct: 61 RAMTRRYFSDLDKYAESDIVIVGAGSAGLTAAYYIGTRRPDLKIAIIEASVAPGG 115
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 544 NIFGIYSLNTFLSVYFNFIWGNYS 473
NI +YS +T L YF+ I+ NYS
Sbjct: 3488 NIQKLYSPSTILKDYFSSIFTNYS 3511
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,799,895
Number of Sequences: 5004
Number of extensions: 58900
Number of successful extensions: 189
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -