Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_N13
         (351 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77133-6|CAB00869.1|  338|Caenorhabditis elegans Hypothetical pr...    27   2.9  
Z69794-6|CAA93683.1|  338|Caenorhabditis elegans Hypothetical pr...    27   2.9  
AL132876-24|CAE17987.1|  405|Caenorhabditis elegans Hypothetical...    26   8.7  

>Z77133-6|CAB00869.1|  338|Caenorhabditis elegans Hypothetical
           protein R03G8.5 protein.
          Length = 338

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -1

Query: 195 FDPNFNGKKSWWCTTRILL*LFVIAISSTSTSXCDXLNYSENFRKVK 55
           FDP+ NG   WW    I+   F+++I       C    YS+   K+K
Sbjct: 182 FDPS-NGSIRWWNVMTIVNMSFIMSIQYGIIIYCGWSMYSKMEEKIK 227


>Z69794-6|CAA93683.1|  338|Caenorhabditis elegans Hypothetical
           protein R03G8.5 protein.
          Length = 338

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -1

Query: 195 FDPNFNGKKSWWCTTRILL*LFVIAISSTSTSXCDXLNYSENFRKVK 55
           FDP+ NG   WW    I+   F+++I       C    YS+   K+K
Sbjct: 182 FDPS-NGSIRWWNVMTIVNMSFIMSIQYGIIIYCGWSMYSKMEEKIK 227


>AL132876-24|CAE17987.1|  405|Caenorhabditis elegans Hypothetical
           protein Y105E8A.29 protein.
          Length = 405

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = -1

Query: 261 KKYLLNNIKKS*YNIFKKY*FCFDPNFNGKK---SWWCTTRILL*LFVIAISSTSTS 100
           K + L   +K    IFKK    F  N N  K   SW CT+ +L  +F  A SS+S S
Sbjct: 196 KNFFLEKYEKK---IFKKI-SEFPGNKNRSKLYNSWMCTSMLLDTVFTTATSSSSYS 248


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,817,331
Number of Sequences: 27780
Number of extensions: 69796
Number of successful extensions: 174
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)