Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_N12
(625 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC022443-1|AAH22443.1| 192|Homo sapiens ZCCHC10 protein protein. 72 1e-12
BC005211-1|AAH05211.1| 170|Homo sapiens zinc finger, CCHC domai... 72 1e-12
AK000101-1|BAA90946.1| 170|Homo sapiens protein ( Homo sapiens ... 72 1e-12
X13916-1|CAA32112.1| 4544|Homo sapiens LDL-receptor related prec... 31 2.5
DQ314873-1|ABC40732.1| 4544|Homo sapiens low density lipoprotein... 31 2.5
AF058427-1|AAC64265.1| 4544|Homo sapiens lipoprotein receptor-re... 31 2.5
AB209498-1|BAD92735.1| 2359|Homo sapiens low density lipoprotein... 31 2.5
Z98884-5|CAI21436.1| 1201|Homo sapiens period homolog 3 (Drosoph... 30 7.6
Z98884-4|CAI21435.1| 1210|Homo sapiens period homolog 3 (Drosoph... 30 7.6
EF015893-1|ABM64204.1| 1201|Homo sapiens period 3 protein. 30 7.6
BC146781-1|AAI46782.1| 1210|Homo sapiens PER3 protein protein. 30 7.6
AY493418-1|AAS72879.1| 1201|Homo sapiens growth-inhibiting prote... 30 7.6
AL157954-1|CAB76084.1| 1201|Homo sapiens hypothetical protein pr... 30 7.6
AB047686-1|BAB32925.2| 1233|Homo sapiens period (Drosophila) hom... 30 7.6
>BC022443-1|AAH22443.1| 192|Homo sapiens ZCCHC10 protein protein.
Length = 192
Score = 72.1 bits (169), Expect = 1e-12
Identities = 35/62 (56%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
Frame = +1
Query: 112 QGIRCQKCLEFGHWSYECKGKRKILVRPSRTRIMHKNLKAKEEG---QCSNGSCKIPNKK 282
Q +RCQKCLEFGHW+YEC GKRK L RPSRT + K LK KE Q S G + K
Sbjct: 41 QHVRCQKCLEFGHWTYECTGKRKYLHRPSRTAELKKALKEKENRLLLQQSIGETNVERKA 100
Query: 283 KR 288
K+
Sbjct: 101 KK 102
>BC005211-1|AAH05211.1| 170|Homo sapiens zinc finger, CCHC domain
containing 10 protein.
Length = 170
Score = 72.1 bits (169), Expect = 1e-12
Identities = 35/62 (56%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
Frame = +1
Query: 112 QGIRCQKCLEFGHWSYECKGKRKILVRPSRTRIMHKNLKAKEEG---QCSNGSCKIPNKK 282
Q +RCQKCLEFGHW+YEC GKRK L RPSRT + K LK KE Q S G + K
Sbjct: 19 QHVRCQKCLEFGHWTYECTGKRKYLHRPSRTAELKKALKEKENRLLLQQSIGETNVERKA 78
Query: 283 KR 288
K+
Sbjct: 79 KK 80
>AK000101-1|BAA90946.1| 170|Homo sapiens protein ( Homo sapiens
cDNA FLJ20094 fis, clone COL04320. ).
Length = 170
Score = 72.1 bits (169), Expect = 1e-12
Identities = 35/62 (56%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
Frame = +1
Query: 112 QGIRCQKCLEFGHWSYECKGKRKILVRPSRTRIMHKNLKAKEEG---QCSNGSCKIPNKK 282
Q +RCQKCLEFGHW+YEC GKRK L RPSRT + K LK KE Q S G + K
Sbjct: 19 QHVRCQKCLEFGHWTYECTGKRKYLHRPSRTAELKKALKEKENRLLLQQSIGETNVERKA 78
Query: 283 KR 288
K+
Sbjct: 79 KK 80
>X13916-1|CAA32112.1| 4544|Homo sapiens LDL-receptor related precursor
(AA -19 to 4525) protein.
Length = 4544
Score = 31.5 bits (68), Expect = 2.5
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 145 GHWSYECKGKRKILVRPSRTRIMHKNLKAKEEGQCSNGSC 264
GH + C+G R IL R ++ + +A++E +C+NG C
Sbjct: 2499 GHVNCSCRGGR-ILQDDLTCRAVNSSCRAQDEFECANGEC 2537
>DQ314873-1|ABC40732.1| 4544|Homo sapiens low density
lipoprotein-related protein 1 (alpha-2-macroglobulin
receptor) protein.
Length = 4544
Score = 31.5 bits (68), Expect = 2.5
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 145 GHWSYECKGKRKILVRPSRTRIMHKNLKAKEEGQCSNGSC 264
GH + C+G R IL R ++ + +A++E +C+NG C
Sbjct: 2499 GHVNCSCRGGR-ILQDDLTCRAVNSSCRAQDEFECANGEC 2537
>AF058427-1|AAC64265.1| 4544|Homo sapiens lipoprotein receptor-related
protein protein.
Length = 4544
Score = 31.5 bits (68), Expect = 2.5
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 145 GHWSYECKGKRKILVRPSRTRIMHKNLKAKEEGQCSNGSC 264
GH + C+G R IL R ++ + +A++E +C+NG C
Sbjct: 2499 GHVNCSCRGGR-ILQDDLTCRAVNSSCRAQDEFECANGEC 2537
>AB209498-1|BAD92735.1| 2359|Homo sapiens low density
lipoprotein-related protein 1 variant protein.
Length = 2359
Score = 31.5 bits (68), Expect = 2.5
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 145 GHWSYECKGKRKILVRPSRTRIMHKNLKAKEEGQCSNGSC 264
GH + C+G R IL R ++ + +A++E +C+NG C
Sbjct: 315 GHVNCSCRGGR-ILQDDLTCRAVNSSCRAQDEFECANGEC 353
>Z98884-5|CAI21436.1| 1201|Homo sapiens period homolog 3
(Drosophila) protein.
Length = 1201
Score = 29.9 bits (64), Expect = 7.6
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +1
Query: 547 YNSYFQQTYTSKFLFSYFQQTYTSK 621
Y+SY QQ SK +SYFQ TSK
Sbjct: 703 YSSYLQQESRSKAKYSYFQGDSTSK 727
>Z98884-4|CAI21435.1| 1210|Homo sapiens period homolog 3
(Drosophila) protein.
Length = 1210
Score = 29.9 bits (64), Expect = 7.6
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +1
Query: 547 YNSYFQQTYTSKFLFSYFQQTYTSK 621
Y+SY QQ SK +SYFQ TSK
Sbjct: 711 YSSYLQQESRSKAKYSYFQGDSTSK 735
>EF015893-1|ABM64204.1| 1201|Homo sapiens period 3 protein.
Length = 1201
Score = 29.9 bits (64), Expect = 7.6
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +1
Query: 547 YNSYFQQTYTSKFLFSYFQQTYTSK 621
Y+SY QQ SK +SYFQ TSK
Sbjct: 703 YSSYLQQESRSKAKYSYFQGDSTSK 727
>BC146781-1|AAI46782.1| 1210|Homo sapiens PER3 protein protein.
Length = 1210
Score = 29.9 bits (64), Expect = 7.6
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +1
Query: 547 YNSYFQQTYTSKFLFSYFQQTYTSK 621
Y+SY QQ SK +SYFQ TSK
Sbjct: 711 YSSYLQQESRSKAKYSYFQGDSTSK 735
>AY493418-1|AAS72879.1| 1201|Homo sapiens growth-inhibiting protein
13 protein.
Length = 1201
Score = 29.9 bits (64), Expect = 7.6
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +1
Query: 547 YNSYFQQTYTSKFLFSYFQQTYTSK 621
Y+SY QQ SK +SYFQ TSK
Sbjct: 703 YSSYLQQESRSKAKYSYFQGDSTSK 727
>AL157954-1|CAB76084.1| 1201|Homo sapiens hypothetical protein
protein.
Length = 1201
Score = 29.9 bits (64), Expect = 7.6
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +1
Query: 547 YNSYFQQTYTSKFLFSYFQQTYTSK 621
Y+SY QQ SK +SYFQ TSK
Sbjct: 703 YSSYLQQESRSKAKYSYFQGDSTSK 727
>AB047686-1|BAB32925.2| 1233|Homo sapiens period (Drosophila)
homolog 3 hPER3 protein.
Length = 1233
Score = 29.9 bits (64), Expect = 7.6
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +1
Query: 547 YNSYFQQTYTSKFLFSYFQQTYTSK 621
Y+SY QQ SK +SYFQ TSK
Sbjct: 734 YSSYLQQESRSKAKYSYFQGDSTSK 758
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,696,715
Number of Sequences: 237096
Number of extensions: 1292919
Number of successful extensions: 3513
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3513
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6747805200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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