Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_N07
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    29   0.65 
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    29   0.86 
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    27   2.0  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    27   2.6  
SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyc...    27   2.6  
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces...    27   3.5  

>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
 Frame = +3

Query: 390 SQDPMAGTIFMERSKASIENGMTRKRSQHQIADNKLKKSSSCSTIYLDDST-VSQPNLKN 566
           ++ P+    F   SK+S +NG+      H I  N ++ S S S+ +L   T +   N+K 
Sbjct: 194 TRSPLRNHNFSNPSKSS-KNGV------HTI--NNMQSSPSPSSSFLLPLTQIDSQNVKR 244

Query: 567 TVRCVALAIYYHIKNRMSERRLDIFDEKLHPLSK 668
           +   ++ +    ++ R+   R+D+ DE LHP S+
Sbjct: 245 SNNYLSTSPPI-LEQRLKRHRIDVSDEDLHPSSQ 277


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = +3

Query: 297 KLEDYLPEGEVSSNNIQHISEREPDDGDI-DPSQDPMAGTIFMERSKASIENGMTRKRSQ 473
           K  D  PEG+ S+      S+ +  DG I DP Q  +           S+    T  ++Q
Sbjct: 74  KAPDSKPEGDKSTGQEADKSQNQSKDGSITDPVQAAVLALSVAYAKPTSVSLSPTDLQAQ 133

Query: 474 HQIADNKLKKSSSCST 521
            ++ +   ++S+S +T
Sbjct: 134 SKLIEKPRRRSASNAT 149


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/47 (23%), Positives = 21/47 (44%)
 Frame = +1

Query: 4   FGRPMPHCQKNHACMQXILKFLQFVHQQIPQIKHAKVLWAFYVLFLC 144
           F + + + + +H C          V+   P ++ A  LW FY++  C
Sbjct: 830 FQKQLDNYKADHYCFTLDFILTDCVNSPKPLLRRASSLWLFYIVRYC 876


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 233 DFTTYDDYKECSLSFYTHCVTTRYTEII 150
           D    D++ +  L FY  C T+++ EII
Sbjct: 475 DCQKIDEFMDAELKFYKECQTSQWEEII 502


>SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 288

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 573 SQCFSNLVETQYYHLSKL*NRNCFSLIYCQLFD 475
           SQC  +LV+  YY    L NR+ F  ++ ++FD
Sbjct: 237 SQCIPHLVQKSYY----LQNRHVFPCVHWEVFD 265


>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 403

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 226 QHMTITKNVRYHSTHIVSRLDIRK**ADTEIR 131
           QH+ + K ++Y +      LD++K   DTEI+
Sbjct: 99  QHLLVQKIIKYKNHQYYEILDLKKTCTDTEIK 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,832,411
Number of Sequences: 5004
Number of extensions: 57327
Number of successful extensions: 144
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)