Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_N07
         (704 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1337 - 26238506-26238737,26239728-26240703,26241266-26242802     29   4.8  
03_02_0764 + 10990220-10992410,10992809-10993616,10994734-109949...    28   6.3  
03_06_0278 - 32817707-32819167                                         28   8.3  
01_01_0660 + 5029070-5029177,5029303-5029398,5029494-5029556,502...    28   8.3  

>08_02_1337 - 26238506-26238737,26239728-26240703,26241266-26242802
          Length = 914

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
 Frame = +3

Query: 378  DIDPSQDPMAGTIFMERSK--ASIEN-GMTRKRSQ---HQIADNKLKKSSSCSTIYLDDS 539
            D++P  DP +   F  R +    IEN G++    Q   +  A+N+ + S S S     D 
Sbjct: 830  DVEPFMDPSSEDKFSSRYRLVGVIENRGLSIHIGQCVAYVRANNQQQGSGSSSWYCATDD 889

Query: 540  TVSQPNLKNTVRCVALAIYY 599
             + + +L+  ++C A  ++Y
Sbjct: 890  DIKEISLEEVLKCEAYLLFY 909


>03_02_0764 +
           10990220-10992410,10992809-10993616,10994734-10994968,
           10995028-10995169,10997365-10997444,10997636-10997776
          Length = 1198

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
 Frame = +3

Query: 474 HQIADNKLKKSSS--CSTIYLDDST--VSQ-PNLKNTVRCVALAIYYHIK 608
           HQ+++  + ++ +  C  +  D  T  V+Q P++ + V+C   A+YYH K
Sbjct: 446 HQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYHGK 495


>03_06_0278 - 32817707-32819167
          Length = 486

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +3

Query: 351 ISEREPDDGDIDPSQDPMAGTIFMERSKASIENGMTRKRSQHQIADNKLKKSSSCSTI 524
           +  ++P +  +DP +D M   + +     + EN + R R QH I  +   +S  CST+
Sbjct: 406 LPRQQPINPILDPQEDGML--LLLIGDYYNDENDVLRCRDQHMITVDMKNQSIVCSTL 461


>01_01_0660 +
           5029070-5029177,5029303-5029398,5029494-5029556,
           5029836-5029913,5030446-5030614,5030797-5031180,
           5031959-5032042,5032143-5032288,5032810-5033070,
           5033147-5033328,5033421-5033586,5033650-5033703,
           5034702-5034965,5035088-5035303,5035388-5035540,
           5035630-5035827
          Length = 873

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
 Frame = +3

Query: 252 CCCYRSPSPIRKDIVKLEDYLPEGEVSSNNIQHISEREPDDGDIDPSQDPMAGTIFMERS 431
           C   ++ +  RK ++  E  +P   V+SN++    ER+ D  +   + D   GT+ +  S
Sbjct: 359 CSASKTRNKRRKKLIAEE--VPTEGVTSNHLDLPEERQVDATECALNSDLERGTVDLPES 416

Query: 432 KASIENGMTRKRSQ-----HQIADNKLKKSSSCSTIYL 530
            A+I   +    SQ     +    +K K  S C + Y+
Sbjct: 417 TANISTKIPDLPSQLKPEINMSRRSKRKSKSPCGSKYV 454


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,758,110
Number of Sequences: 37544
Number of extensions: 347820
Number of successful extensions: 847
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)