Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_N07
         (704 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    24   1.6  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   2.8  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   3.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   6.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.5  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   8.6  

>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
          finger domain-Z3 isoform protein.
          Length = 92

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +1

Query: 19 PHCQKNHACMQXILKFLQFVHQQ 87
          P+C++N +C   + +  Q  H+Q
Sbjct: 9  PYCRRNFSCYYSLKRHFQDKHEQ 31


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -1

Query: 623 LRHSILYVIVNSKCYTPHSVFQIW 552
           L+ +++ + V   C+TP+ V  +W
Sbjct: 259 LKMTVIIIAVFFICWTPYYVMSLW 282


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = -1

Query: 272 WTPIAAATILITHDFTTYDDYKE 204
           W P     +L  ++ +TYDD  +
Sbjct: 273 WAPFHVQRLLYVYEDSTYDDINQ 295


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 403 WLAPFSWNVLKLQ*RMV*LGSG 468
           WL  +SW + K    M+ +G G
Sbjct: 322 WLEQYSWALFKAMSHMLCIGYG 343


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 403 WLAPFSWNVLKLQ*RMV*LGSG 468
           WL  +SW + K    M+ +G G
Sbjct: 290 WLEQYSWALFKAMSHMLCIGYG 311


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 130 VLFLCRLIISVYLVVTQ 180
           +L LC + I  YL VTQ
Sbjct: 126 ILSLCAISIDRYLAVTQ 142


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,852
Number of Sequences: 438
Number of extensions: 4028
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)