Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_N06
         (709 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    24   1.6  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   3.7  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    23   3.7  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   3.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.7  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   8.7  

>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 170 SGSEKDSDFDSDGNYVGEKE 229
           SGS  DSD  +D  +VG+ +
Sbjct: 20  SGSSSDSDGQTDEGFVGDSQ 39


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 137 DTNSESEKEQDSGSEKDSDFDSDGNYVGEKELQADFE 247
           +TNSE   ++D  S+         +Y+  ++L  DFE
Sbjct: 304 ETNSEETHQKDGSSDSVIKRTVVSSYLQLQDLLGDFE 340


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 137 DTNSESEKEQDSGSEKDSDFDSDGNYVGEKELQADFE 247
           +TNSE   ++D  S+         +Y+  ++L  DFE
Sbjct: 219 ETNSEETHQKDGSSDSVIKRTVVSSYLQLQDLLGDFE 255


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 137 DTNSESEKEQDSGSEKDSDFDSDGNYVGEKELQADFE 247
           +TNSE   ++D  S+         +Y+  ++L  DFE
Sbjct: 538 ETNSEETHQKDGSSDSVIKRTVVSSYLQLQDLLGDFE 574


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 176 SEKDSDFDSDGNYVGEKELQAD 241
           + +DSD  SDGN   E   +AD
Sbjct: 192 NRRDSDDGSDGNDGDESSCRAD 213


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/41 (21%), Positives = 19/41 (46%)
 Frame = +2

Query: 104 AKMPNKKNKEIDTNSESEKEQDSGSEKDSDFDSDGNYVGEK 226
           AK+ +       +NS+S++   S   ++S+      Y G +
Sbjct: 10  AKVSDSGYSNTCSNSQSQRSSGSSISRNSNRSESSGYCGRR 50


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/41 (21%), Positives = 19/41 (46%)
 Frame = +2

Query: 104 AKMPNKKNKEIDTNSESEKEQDSGSEKDSDFDSDGNYVGEK 226
           AK+ +       +NS+S++   S   ++S+      Y G +
Sbjct: 10  AKVSDSGYSNTCSNSQSQRSSGSSISRNSNRSESSGYCGRR 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,274
Number of Sequences: 438
Number of extensions: 2680
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)