Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_N05
(688 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0045 - 5251234-5251305,5251362-5251419,5252256-5252539,525... 50 2e-06
01_06_0823 + 32234588-32234936,32236354-32237093,32237260-322373... 38 0.010
04_04_0261 + 24007790-24009098,24009191-24011118 30 1.5
07_03_0846 - 21983581-21986055 30 2.0
12_01_0215 - 1634141-1634144,1634467-1634510,1635639-1635668,163... 29 3.5
11_01_0214 - 1682731-1682744,1683597-1683640,1684284-1684372,168... 29 3.5
12_01_0445 - 3513733-3513819,3514392-3514613,3514730-3514999,351... 29 4.6
07_03_0546 - 19325526-19326054,19327109-19327631,19327898-193281... 29 4.6
01_01_0424 + 3200223-3200634,3200677-3200836,3200987-3201342,320... 28 6.0
01_01_0370 + 2895685-2895717,2895892-2896944 28 6.0
>03_02_0045 -
5251234-5251305,5251362-5251419,5252256-5252539,
5252836-5253019,5253564-5253814,5253921-5254024,
5254143-5254281
Length = 363
Score = 49.6 bits (113), Expect = 2e-06
Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 7/130 (5%)
Frame = +3
Query: 243 SFTLGSWQVYRWQWKLGLIDMMQAKSNAVPID----MPKDFS---ELEKMEYLPVKVKGE 401
+F LGSWQ++R Q K+ ++D + PI P D S + E+ + +G+
Sbjct: 67 TFGLGSWQLFRRQEKIEMLDYRTRRLEMEPIAWNQMAPSDLSAGVDPATPEFRRIVCEGD 126
Query: 402 FLHEKEILIGPRALIEESSITNRVGSLVSDPKKNQGWLVITPFKLADTGEVILINRGWIH 581
F E+ + +GPR+ S +T G V P L+ P + + IL+NRGW+
Sbjct: 127 FDEERSVFVGPRSR-SISGVTEN-GYYVVTP------LIPRPSEHGSSWPPILVNRGWVP 178
Query: 582 QNLRPKEKRE 611
++ R K ++
Sbjct: 179 RDWRDKNVQD 188
>01_06_0823 +
32234588-32234936,32236354-32237093,32237260-32237343,
32237909-32239263,32240399-32240460,32240544-32241144,
32241229-32241310,32241778-32241840
Length = 1111
Score = 37.5 bits (83), Expect = 0.010
Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 1/130 (0%)
Frame = -1
Query: 484 TSEPTLLVIELSSMSALGPINISFSCKNSPFTFTGKYSIFSNSEKSFGMSIGTALDLACI 305
TS +L + ++ P + + K S + +I + E G++ TA ACI
Sbjct: 119 TSVQRILADLIPQYASYCPTALEAATKVSINMYKWNLAIVTRGEDVDGVAYQTAR--ACI 176
Query: 304 MSMSPSFHCHLYTCHEPRVKEVTGIISKIHLYISVGSSFLLTFCDRIIFAIFVLNLTLLT 125
+ ++ C +C P+ +TGI S + YI+V + F+ TF + I+ I L L
Sbjct: 177 LGLTDI--CSTASCEAPKSSVLTGICSAV--YITVLTFFISTFDGKDIYHIGSRKLLNLQ 232
Query: 124 DPF-LIKVLE 98
DP L+ +L+
Sbjct: 233 DPVELLDILK 242
>04_04_0261 + 24007790-24009098,24009191-24011118
Length = 1078
Score = 30.3 bits (65), Expect = 1.5
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 1/103 (0%)
Frame = -1
Query: 454 LSSMSALGPINISFSCKNSPFTFTGKYSIFSNSEKSFGMSI-GTALDLACIMSMSPSFHC 278
L S++++G +N+S++ G++ F +S ++ G L + C S +
Sbjct: 980 LVSLTSVGWLNLSYNRLEGAIPQGGQFQTFGSSSFEGNAALCGKPLSIRCNGSNAGPPSL 1039
Query: 277 HLYTCHEPRVKEVTGIISKIHLYISVGSSFLLTFCDRIIFAIF 149
E R + + LYISVGS F L F +F +F
Sbjct: 1040 EHSESWEARTETIV-------LYISVGSGFGLGFAMAFLFQVF 1075
>07_03_0846 - 21983581-21986055
Length = 824
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 673 ALFSVNLTTPVSSTGPFIKDGSRFSLG 593
A+ ++N TTP+S T + G RF+LG
Sbjct: 18 AVDTINSTTPLSGTQKIVSKGGRFALG 44
>12_01_0215 -
1634141-1634144,1634467-1634510,1635639-1635668,
1635784-1635891,1635975-1636060,1636779-1636866,
1638135-1638253,1638525-1638600,1638820-1638882,
1639536-1639592,1640016-1640056,1640642-1640738,
1641636-1641692
Length = 289
Score = 29.1 bits (62), Expect = 3.5
Identities = 22/100 (22%), Positives = 51/100 (51%), Gaps = 5/100 (5%)
Frame = -1
Query: 388 FTGKYSIFSNSEKSFGMSIGTALDLACIMSMSPSFHCHLYTCHEPRVKEVTGIISKIHLY 209
+T +S++S S+K FG ++ D+ +++++ + T P + +V GII+ +
Sbjct: 168 YTEIFSLWSESDKQFGGLNFSSEDVGQVLAITGASILIYQTFIYPHIVKVLGIINTSRVA 227
Query: 208 ISVGSSFL-----LTFCDRIIFAIFVLNLTLLTDPFLIKV 104
+ + + L +T+ R +I V ++L + F+ K+
Sbjct: 228 VILSMALLCSYPPMTYLSRPWLSIVVNIASMLKNNFVCKL 267
>11_01_0214 -
1682731-1682744,1683597-1683640,1684284-1684372,
1684461-1684505,1685044-1685073,1685189-1685296,
1685380-1685465,1686180-1686267,1687494-1687694,
1687885-1687960,1688040-1688089,1688180-1688242,
1688322-1688398,1688893-1688953,1689377-1689417,
1690005-1690086
Length = 384
Score = 29.1 bits (62), Expect = 3.5
Identities = 22/100 (22%), Positives = 51/100 (51%), Gaps = 5/100 (5%)
Frame = -1
Query: 388 FTGKYSIFSNSEKSFGMSIGTALDLACIMSMSPSFHCHLYTCHEPRVKEVTGIISKIHLY 209
+T +S++S S+K FG ++ D+ +++++ + T P + +V GII+ +
Sbjct: 215 YTEIFSLWSESDKQFGGLNFSSEDVGQVLAITGASILIYQTFIYPHIVKVLGIINTSRVA 274
Query: 208 ISVGSSFL-----LTFCDRIIFAIFVLNLTLLTDPFLIKV 104
+ + + L +T+ R +I V ++L + F+ K+
Sbjct: 275 VILSMAILCSYPPMTYLSRPWLSIVVNIASMLKNNFVCKL 314
>12_01_0445 -
3513733-3513819,3514392-3514613,3514730-3514999,
3515033-3517110,3517649-3517976,3519136-3519255,
3519299-3519352,3520115-3520154,3520344-3520411
Length = 1088
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 279 QWKLGLIDMMQAKSNAVPIDMPKDFSELEKMEYLP 383
Q+K G D +N V ID+ DF E+E++ LP
Sbjct: 438 QFKNGNADEKNLVNNPVVIDLMDDFLEMERLAALP 472
>07_03_0546 -
19325526-19326054,19327109-19327631,19327898-19328152,
19328283-19328472,19328473-19328525,19329295-19329555,
19329670-19329720,19329873-19330121,19330225-19330453,
19332245-19332559
Length = 884
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/66 (22%), Positives = 35/66 (53%)
Frame = +3
Query: 36 EGSRYRMFNNIFKISRNLNIISNTFIKKGSVSNVRFNTNIANIMRSQKVKRKEEPTEIYK 215
EG + +++ I + +R ++++ N +S+ + + RS K+K + E + + K
Sbjct: 181 EGGTFALYSLICRNAR-VSLLPNQLRSDTRISSFQLQVPSVELERSLKIKERLETSSMLK 239
Query: 216 WILLMI 233
+LLM+
Sbjct: 240 KLLLML 245
>01_01_0424 +
3200223-3200634,3200677-3200836,3200987-3201342,
3201958-3203252
Length = 740
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -1
Query: 457 ELSSMSALGPINISFSCKNSPFTFTGKYSIFSNS 356
EL+S+ LG +N+S++ + +S+FSNS
Sbjct: 635 ELASLDFLGTLNLSYNMLEGKIPESPHFSLFSNS 668
>01_01_0370 + 2895685-2895717,2895892-2896944
Length = 361
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/75 (28%), Positives = 39/75 (52%)
Frame = +3
Query: 378 LPVKVKGEFLHEKEILIGPRALIEESSITNRVGSLVSDPKKNQGWLVITPFKLADTGEVI 557
L V G+ L+++ ++G A ++E + LV G+ VI P+ +T EVI
Sbjct: 292 LVVASGGDVLYDR--VVGYAARLKEMG---KAVELVEFEGAQHGFSVIQPWS-PETSEVI 345
Query: 558 LINRGWIHQNLRPKE 602
+ + ++H+ +RP E
Sbjct: 346 QVLKRFVHKAIRPAE 360
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,235,341
Number of Sequences: 37544
Number of extensions: 310817
Number of successful extensions: 938
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -