Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_N05
(688 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor pr... 27 0.22
DQ011226-1|AAY63895.1| 471|Apis mellifera Rh-like protein protein. 25 0.68
AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice... 22 4.8
AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein. 22 4.8
L10710-1|AAA27730.1| 382|Apis mellifera hyaluronidase protein. 22 6.3
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.3
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.3
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.3
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.3
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.3
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.3
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 6.3
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 6.3
>DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor
protein.
Length = 459
Score = 26.6 bits (56), Expect = 0.22
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +3
Query: 261 WQVYRWQWKLGL 296
WQ Y WQW LG+
Sbjct: 95 WQQYPWQWGLGI 106
>DQ011226-1|AAY63895.1| 471|Apis mellifera Rh-like protein protein.
Length = 471
Score = 25.0 bits (52), Expect = 0.68
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 220 IHLYISVGSSFLLTFCDRIIFAIFVLNLTLLTDPFLIKV 104
+H+ I +G FL+TF R + + LT L L++V
Sbjct: 58 VHVMIWIGFGFLMTFLRR--YGQSAVGLTFLLGAILVQV 94
>AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice
variant B protein.
Length = 810
Score = 22.2 bits (45), Expect = 4.8
Identities = 11/45 (24%), Positives = 23/45 (51%)
Frame = -1
Query: 451 SSMSALGPINISFSCKNSPFTFTGKYSIFSNSEKSFGMSIGTALD 317
+ +SAL +N ++ KN+ ++ G I N ++ + T +D
Sbjct: 386 NKISALRALNDLYNVKNTLDSYNGSMEINQNIAQNIDHAKNTIID 430
>AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein.
Length = 429
Score = 22.2 bits (45), Expect = 4.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 342 PKDFSELEKMEYLPVKVKGEFLHEK 416
P DFS K ++ KV+G +HE+
Sbjct: 208 PTDFSMGVKNNHVSSKVEGNGVHEE 232
>L10710-1|AAA27730.1| 382|Apis mellifera hyaluronidase protein.
Length = 382
Score = 21.8 bits (44), Expect = 6.3
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = -1
Query: 292 PSFHCHLYTCHEPRVKEVTGII 227
P+F CH Y V E GI+
Sbjct: 50 PTFMCHKYGLRFEEVSEKYGIL 71
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.3
Identities = 8/30 (26%), Positives = 15/30 (50%)
Frame = -1
Query: 556 MTSPVSANLNGVITNHPWFFFGSDTSEPTL 467
++S +L+ ITN W+ G + T+
Sbjct: 143 LSSETGGDLSDFITNGEWYLIGMPGKKNTI 172
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.3
Identities = 8/30 (26%), Positives = 15/30 (50%)
Frame = -1
Query: 556 MTSPVSANLNGVITNHPWFFFGSDTSEPTL 467
++S +L+ ITN W+ G + T+
Sbjct: 143 LSSETGGDLSDFITNGEWYLIGMPGKKNTI 172
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.3
Identities = 8/30 (26%), Positives = 15/30 (50%)
Frame = -1
Query: 556 MTSPVSANLNGVITNHPWFFFGSDTSEPTL 467
++S +L+ ITN W+ G + T+
Sbjct: 143 LSSETGGDLSDFITNGEWYLIGMPGKKNTI 172
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.3
Identities = 8/30 (26%), Positives = 15/30 (50%)
Frame = -1
Query: 556 MTSPVSANLNGVITNHPWFFFGSDTSEPTL 467
++S +L+ ITN W+ G + T+
Sbjct: 143 LSSETGGDLSDFITNGEWYLIGMPGKKNTI 172
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.3
Identities = 8/30 (26%), Positives = 15/30 (50%)
Frame = -1
Query: 556 MTSPVSANLNGVITNHPWFFFGSDTSEPTL 467
++S +L+ ITN W+ G + T+
Sbjct: 143 LSSETGGDLSDFITNGEWYLIGMPGKKNTI 172
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.3
Identities = 8/30 (26%), Positives = 15/30 (50%)
Frame = -1
Query: 556 MTSPVSANLNGVITNHPWFFFGSDTSEPTL 467
++S +L+ ITN W+ G + T+
Sbjct: 143 LSSETGGDLSDFITNGEWYLIGMPGKKNTI 172
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 6.3
Identities = 8/30 (26%), Positives = 15/30 (50%)
Frame = -1
Query: 556 MTSPVSANLNGVITNHPWFFFGSDTSEPTL 467
++S +L+ ITN W+ G + T+
Sbjct: 211 LSSETGGDLSDFITNGEWYLIGMPGKKNTI 240
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 6.3
Identities = 8/30 (26%), Positives = 15/30 (50%)
Frame = -1
Query: 556 MTSPVSANLNGVITNHPWFFFGSDTSEPTL 467
++S +L+ ITN W+ G + T+
Sbjct: 211 LSSETGGDLSDFITNGEWYLIGMPGKKNTI 240
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,921
Number of Sequences: 438
Number of extensions: 3700
Number of successful extensions: 14
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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