Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_N04
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo...    29   0.82 
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    27   1.9  
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    26   5.8  

>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 569

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = +1

Query: 421 IAEQCIALECLYENDLIYR 477
           IAE  +ALECL+E ++IYR
Sbjct: 334 IAELLVALECLHEFNVIYR 352


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +3

Query: 114 HIYGKYTTRIKS--FYCITKLD*VFIDILLITLGLNYMVISEQSDFNVV 254
           HI+  YT  I++    C+ K+   FI  L  T+   +MV+   S  N+V
Sbjct: 258 HIHSVYTMGIQTALLICLHKVPEGFITFLASTVDTGFMVLVAMSIHNIV 306


>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = +1

Query: 421 IAEQCIALECLYENDLIYR 477
           IAE  +ALE L+++D+IYR
Sbjct: 409 IAELVLALEHLHKHDIIYR 427


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,725,574
Number of Sequences: 5004
Number of extensions: 56652
Number of successful extensions: 118
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)