Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_N04
         (678 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1289 - 35470076-35470243,35471032-35471108,35471935-354719...    31   0.85 
06_03_0784 - 24557089-24557198,24557296-24560725                       29   2.6  
03_05_0382 + 23649597-23649645,23649675-23649735,23650784-236509...    29   3.4  
05_03_0645 + 16529635-16529794,16530188-16530312,16531100-165311...    29   4.5  

>02_05_1289 -
           35470076-35470243,35471032-35471108,35471935-35471971,
           35472559-35472618,35472693-35472769,35473244-35473364,
           35473505-35473597,35473708-35473770,35475195-35475245,
           35475384-35475511,35476249-35476343,35476345-35476427,
           35476653-35476808,35477046-35477182,35477243-35477252,
           35477291-35477380,35477771-35478070,35479054-35479120,
           35479382-35479469,35480317-35480373,35480469-35480592
          Length = 693

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +2

Query: 95  TVSVLSSYLRKIYHANKELLLYNEIGLSFHRYLTNYPWS 211
           TV+  S  +  I   + +++ +N + LSF R++TN+P S
Sbjct: 567 TVARTSIDINLISKDSSKVIFFNNVNLSFFRFITNFPCS 605


>06_03_0784 - 24557089-24557198,24557296-24560725
          Length = 1179

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 285 NFHCIFHFTVQVHLFVDVSALHNLDKL 365
           N  CIFH  V   LFVD++++ N+  L
Sbjct: 664 NLSCIFHIDVHKDLFVDLASVGNMPYL 690


>03_05_0382 +
           23649597-23649645,23649675-23649735,23650784-23650937,
           23651019-23651149,23651239-23651315,23651439-23651477,
           23651976-23652067,23652140-23652277,23652385-23652549
          Length = 301

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -3

Query: 397 EHYT*YSIYVISLSKLCNADTSTNKCTCTVKWNIQ*KFT 281
           E  T   I  I + K C   TS+  C C + WN+  K +
Sbjct: 52  EDETHEGIKTIRIQKACEFTTSSVLCVCIITWNMNGKMS 90


>05_03_0645 +
           16529635-16529794,16530188-16530312,16531100-16531173,
           16531961-16532006,16532638-16532730,16534429-16535886
          Length = 651

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +1

Query: 505 LIQLFCQPYRPVSCYYDVNCYILNVIRIALGKHFKIVIESYIFHQR 642
           L+ L   P +P        C+I N + +    H  + + S++FHQR
Sbjct: 360 LLSLPPSPLQPAMSGSTATCFICNKLLLPTDLHLVLPVCSHMFHQR 405


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,010,628
Number of Sequences: 37544
Number of extensions: 272136
Number of successful extensions: 387
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)