Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_N04
         (678 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily as...    29   2.3  
AF016414-4|AAG24021.2|  230|Caenorhabditis elegans Serpentine re...    29   2.3  
AF016414-3|AAW88405.1|  329|Caenorhabditis elegans Serpentine re...    29   2.3  
Z82086-5|CAB04992.2|  325|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AF125960-2|AAD14736.1|  478|Caenorhabditis elegans Hypothetical ...    28   7.0  

>U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 77 protein.
          Length = 1004

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 20/71 (28%), Positives = 31/71 (43%)
 Frame = +1

Query: 421 IAEQCIALECLYENDLIYRFSKKLTLSWLIQLFCQPYRPVSCYYDVNCYILNVIRIALGK 600
           I+ +C+   C  E ++I R        WLI  FC+   P+S  YD      NV      +
Sbjct: 778 ISNECLMEGCSTEFNIINRRHHCRDCGWLICKFCKGQAPLS-KYDFTKQ--NVCSECFDR 834

Query: 601 HFKIVIESYIF 633
           H+K   +  +F
Sbjct: 835 HYKAYKDGVLF 845


>AF016414-4|AAG24021.2|  230|Caenorhabditis elegans Serpentine
           receptor, class h protein210, isoform a protein.
          Length = 230

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +3

Query: 276 IFVN--FHCIFHFTVQVHLFVDVSALHNLDKLITYIEYYV 389
           IFV   FHC+  F V VH+FV    L    K +  +++Y+
Sbjct: 16  IFVTMAFHCLTIFEVPVHIFVGYLILFKTPKRMGNVKWYM 55


>AF016414-3|AAW88405.1|  329|Caenorhabditis elegans Serpentine
           receptor, class h protein210, isoform b protein.
          Length = 329

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +3

Query: 276 IFVN--FHCIFHFTVQVHLFVDVSALHNLDKLITYIEYYV 389
           IFV   FHC+  F V VH+FV    L    K +  +++Y+
Sbjct: 16  IFVTMAFHCLTIFEVPVHIFVGYLILFKTPKRMGNVKWYM 55


>Z82086-5|CAB04992.2|  325|Caenorhabditis elegans Hypothetical
           protein ZK228.5 protein.
          Length = 325

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/73 (23%), Positives = 36/73 (49%)
 Frame = +3

Query: 81  IVLYSRFLYSRHIYGKYTTRIKSFYCITKLD*VFIDILLITLGLNYMVISEQSDFNVV*K 260
           ++  S FLY      + T R++  + +     VFI ++ I++ + Y++++   D+     
Sbjct: 212 VIRISWFLYHTVSQSQATNRLQKQFFVALCIQVFIPLVFISIPVAYIILAVYLDYYNQAA 271

Query: 261 STYKLIFVNFHCI 299
           +   LI + FH I
Sbjct: 272 NNSALIAIAFHGI 284


>AF125960-2|AAD14736.1|  478|Caenorhabditis elegans Hypothetical
           protein T12B3.2 protein.
          Length = 478

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 60  FHICM*IIVLYSRFLYSRHIYGKYTTRIKSFYC 158
           FHIC  I   ++ F   ++I+G Y+  +  + C
Sbjct: 8   FHICAFITWQFANFFAGQNIFGIYSNNVSKWKC 40


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,661,454
Number of Sequences: 27780
Number of extensions: 304842
Number of successful extensions: 631
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)