Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_N03
         (623 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   1.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   5.6  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   5.6  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   5.6  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   9.8  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   9.8  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   9.8  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   9.8  

>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
 Frame = -3

Query: 189 ETADVHASTTRTHGLVLFMKIQLK---FIYVNKN*R--F*LILNTFMNKN*RDDY*TDGD 25
           +  ++ A   RT  ++  MKI+ +   F+  NK  +  + L+L+  M K   DD+  D  
Sbjct: 337 QNLEMVAQNDRTLQMIAGMKIKEELPHFVGSNKPVKDEYMLVLSNRMQKIVNDDFNFDDV 396

Query: 24  YFRVIG 7
            FR++G
Sbjct: 397 NFRILG 402


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 338 FIALHASSASCKFSNSMKAKPGG 270
           F+A     A+C+FS   +A+ GG
Sbjct: 458 FLATVVEEAACRFSAVAQAQLGG 480


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 319 LPPPASSQIL*KRNLGDLVLPKLS 248
           L P  S  I  K+ + DLV+ KLS
Sbjct: 206 LQPVVSDPIFDKKAMSDLVICKLS 229


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 319 LPPPASSQIL*KRNLGDLVLPKLS 248
           L P  S  I  K+ + DLV+ KLS
Sbjct: 206 LQPVVSDPIFDKKAMSDLVICKLS 229


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 244 LNSVWVALNPPGFAF 288
           L  VW+ + PPG  F
Sbjct: 641 LTLVWMIIEPPGTRF 655


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +2

Query: 422 GAAVTSGVVVHSEVREEAGLTT 487
           G  + +G+ VH    ++AG+ T
Sbjct: 289 GIVLATGITVHRNSAQQAGVGT 310


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +2

Query: 422 GAAVTSGVVVHSEVREEAGLTT 487
           G  + +G+ VH    ++AG+ T
Sbjct: 289 GIVLATGITVHRNSAQQAGVGT 310


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 244 LNSVWVALNPPGFAF 288
           L  VW+ + PPG  F
Sbjct: 731 LTLVWMIIEPPGTRF 745


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,791
Number of Sequences: 438
Number of extensions: 2059
Number of successful extensions: 26
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)