Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_N02
(697 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 33 0.030
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac... 29 0.48
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy... 27 1.9
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 27 3.4
SPAC8C9.07 |||rRNA processing protein Fyv7 |Schizosaccharomyces ... 27 3.4
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo... 26 4.5
SPAC4F10.18 |||WD repeat protein, human NUP37 family|Schizosacch... 26 5.9
SPCC18.10 |||pyridoxine-pyridoxal-pyridoxamine kinase|Schizosacc... 25 7.8
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces... 25 7.8
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 33.5 bits (73), Expect = 0.030
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Frame = +2
Query: 203 VLP-NPVFSELPQNYRLSEEQKSFYWENGYLVIKELIDFTSLYSYKQRFLQICKGIVDSP 379
V+P PVF+ LP +YR K Y + +LV ++ +S Y + Q L+ K +
Sbjct: 27 VVPIQPVFAPLPPDYR--SLYKKLYGQGAFLVDNP-VEASSPYDFSQPILKFGKLPIKQV 83
Query: 380 VMIVKEQALFEKNLKPEEYINKLQE 454
+ + Q KNL + N++QE
Sbjct: 84 LRDNESQQKDRKNLPRNQKSNEIQE 108
>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 446
Score = 29.5 bits (63), Expect = 0.48
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = -3
Query: 206 ELLNLLKAFCSLN*YTF*LIKSNFQTKNYSHRTR-KFFVQCRYLRNTHN 63
E L + A+C+ + + L+ FQ++ SH+TR K F +C Y ++N
Sbjct: 63 EFLPRVTAYCTCDTFRVDLLFKFFQSRRSSHKTRPKQFDECIYSPYSYN 111
>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 424
Score = 27.5 bits (58), Expect = 1.9
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 163 Y*FKLQNAFK-RFKSST*SSVLRAATELQTVRGTKIILLGEW 285
Y F+ N K RF+S+ L+ +QT RGTK++ G W
Sbjct: 308 YIFRGANGQKNRFRSNPNDPKLKHLKFIQTKRGTKLLTSGWW 349
>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 268
Score = 26.6 bits (56), Expect = 3.4
Identities = 27/123 (21%), Positives = 58/123 (47%), Gaps = 7/123 (5%)
Frame = +2
Query: 200 KVLPNPVFSELPQNYRLSE--EQKSFYWENGYLVIKELIDFTSLYSYKQRFLQICKGIVD 373
++L P FS RL++ + F ++ + + + SL S++Q + +
Sbjct: 95 QLLRQPSFSSSENTDRLADLLRVRRFIYQKAW----KSYENPSLSSHRQYQIPTPIQLAS 150
Query: 374 SPVMIVKEQALFEKNLKPEEY-----INKLQEILYDDVFMTYGEHPRLLEVISQFIGDDI 538
S ++ K ++ K L EY IN +Q L + + +HP+ ++ +++FIG +
Sbjct: 151 SASLLKKVESFIAKELLLFEYLDGHQINFIQIFLMGLLRVQNIQHPQTIDELAEFIGHEE 210
Query: 539 TAI 547
++I
Sbjct: 211 SSI 213
>SPAC8C9.07 |||rRNA processing protein Fyv7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 144
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 359 KGIVDSPVMIVKEQALFEKNLKPEEYINK 445
K I ++ K + F KN++PEEYI K
Sbjct: 33 KRIKQDLILKAKTKKHFYKNVRPEEYIKK 61
>SPBC1718.02 |hop1||linear element associated protein
Hop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 380 VMIVKEQALFEKNLKPEEYINK-LQEILYDDVFMT 481
+MI KE +LF+ K + + K LQ + YD++ T
Sbjct: 236 IMINKESSLFDSQEKIDSQLEKFLQPLKYDEIGST 270
>SPAC4F10.18 |||WD repeat protein, human NUP37
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 391
Score = 25.8 bits (54), Expect = 5.9
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Frame = +2
Query: 467 DVFMTYGEHPRLLEVISQFIGDDITAIHSMFINKPPGTARHP---PHQDLFYFPIRPVDK 637
D+ Y RL E + +GDD T I ++ P A +P P + + P P
Sbjct: 141 DIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQL 200
Query: 638 IIG 646
I+G
Sbjct: 201 IVG 203
>SPCC18.10 |||pyridoxine-pyridoxal-pyridoxamine
kinase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 340
Score = 25.4 bits (53), Expect = 7.8
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +2
Query: 452 EILYDDVFMTYGEHPRLLEVISQFIGDDITAIHSMFINKPPGT 580
EIL D V T + R LE I Q G I S + + PGT
Sbjct: 157 EILTDIVIHTQMDAKRGLEKIYQLYGIQNAIITSFEVEESPGT 199
>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 815
Score = 25.4 bits (53), Expect = 7.8
Identities = 14/61 (22%), Positives = 30/61 (49%)
Frame = +2
Query: 386 IVKEQALFEKNLKPEEYINKLQEILYDDVFMTYGEHPRLLEVISQFIGDDITAIHSMFIN 565
IV+E + E L +E+I+ +Q+ Y + YG P+ + V+ + + + F+
Sbjct: 405 IVRE--IKEVELYAKEFISGIQQASYPEAAKHYGRDPKQMGVVVEKLNSQCLEMVYSFVG 462
Query: 566 K 568
+
Sbjct: 463 E 463
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,890,735
Number of Sequences: 5004
Number of extensions: 60954
Number of successful extensions: 148
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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